# Repeated Measurement Models for Discrete Times

## Documentation for package ‘LMMstar’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

A B C D E F G I L M N P R S T U V W

## -- A --

abetaL | Data From The Bland Altman Study (Long Format)
abetaW | Data From The abeta Study (Wide Format)
add | Add Columns to Output
anova.lmm | Multivariate Tests For Linear Mixed Model
autoplot.lmm | Graphical Display For Linear Mixed Models
autoplot.partialCor | Graphical Display For Partial Correlation
autoplot.profile_lmm | Graphical Display of Profile Likelihood
autoplot.residuals_lmm | Graphical Display of the Residuals
autoplot.summarize | Graphical Display of the Descriptive Statistics
autoplot.summarizeNA | Graphical Display of Missing Data Pattern
autoplot.Wald_lmm | Graphical Display For Linear Hypothesis Test

## -- B --

baselineAdjustment | Perform Baseline Adjustment
blandAltmanL | Data From The Bland Altman Study (Long Format)
blandAltmanW | Data From The Bland Altman Study (Wide Format)
bloodpressureL | Data From The Blood Pressure Study (Long Format)

## -- C --

calciumL | Data From The Calcium Supplements Study (Long Format)
calciumW | Data From The Calcium Supplements Study (Wide Format)
ckdL | CKD long
ckdW | CKD wide
coef.lmm | Extract Coefficients From a Linear Mixed Model
coef.mlmm | Extract Coefficients From a Linear Mixed Model
confint.lmm | Statistical Inference for Linear Mixed Model
confint.mlmm | Confidence Intervals for Multiple Linear Mixed Model.
confint.Wald_lmm | Confidence Intervals for Multivariate Wald Tests
CS | Compound Symmetry Structure
CUSTOM | Custom Structure

## -- D --

df.residual.lmm | Residuals Degrees of Freedom

## -- E --

effects.lmm | Effects Derived For Linear Mixed Model
estfun.lmm | Extract the Score Function for Multcomp
estimate.lmm | Delta Method for Mixed Models

## -- F --

fitted.lmm | Predicted Mean Value For Linear Mixed Model.

## -- G --

gastricbypassL | Data From The Gastric Bypass Study (Long Format)
gastricbypassW | Data From The Gastric Bypass Study (Wide Format)

## -- I --

ID | identity Structure
iid.lmm | Extract the Influence Function From a Linear Mixed Model
IND | Independence Structure
information.lmm | Extract The Information From a Linear Mixed Model

## -- L --

levels.lmm | Contrasts and Reference Level
lmm | Fit Linear Mixed Model
lmmCC | Fit Linear Mixed Model on Complete Case data
lmmCC.formula | Fit Linear Mixed Model on Complete Case data
lmmCC.lm | Fit Linear Mixed Model on Complete Case data
LMMstar.options | Global options for LMMstar package
logLik.lmm | Extract The Log-Likelihood From a Linear Mixed Model

## -- M --

manifest.lmm | Variables Involved in a Linear Mixed Model
mlmm | Fit Multiple Linear Mixed Model
model.frame.lmm | Extracting the Model Frame from a Linear Mixed Model
model.matrix.lmm | Design Matrix for Linear Mixed Model
model.tables.lmm | Statistical Inference for Linear Mixed Model
mt.test | Multiple Student's t-Test

## -- N --

ncgsL | Data From National Cooperative Gallstone Study (Long Format)
ncgsW | Data From National Cooperative Gallstone Study (Wide Format)
nobs.lmm | Number of Observations from a Linear Mixed Model

## -- P --

partialCor | Partial Correlation
partialCor.formula | Partial Correlation
partialCor.list | Partial Correlation
partialCor.lmm | Partial Correlation
plot.lmm | Graphical Display For Linear Mixed Models
plot.partialCor | Graphical Display For Partial Correlation
plot.profile_lmm | Graphical Display of Profile Likelihood
plot.residuals_lmm | Graphical Display of the Residuals
plot.summarize | Graphical Display of the Descriptive Statistics
plot.summarizeNA | Graphical Display of Missing Data Pattern
plot.Wald_lmm | Graphical Display For Linear Hypothesis Test
potassiumRepeatedL | Data From The Potassium Intake Study (Long Format with intermediate measurements)
potassiumSingleL | Data From The Potassium Intake Study (Long Format)
potassiumSingleW | Data From The Potassium Intake Study (Wide Format)
predict.lmm | Predicted Mean Value With Uncertainty For Linear Mixed Model
profile.lmm | Evaluate Contour of the Log-Likelihood
proportion | Proportion of Significant Findings

## -- R --

ranef.lmm | Estimate Random Effect From a Linear Mixed Model
rbind.Wald_lmm | Linear Hypothesis Testing Across Linear Mixed Models
RE | Random Effect Structure
remove | Remove Columns from Output
resample | Inference via Resampling for Linear Mixed Model
resample.lmm | Inference via Resampling for Linear Mixed Model
residuals | Extract The Residuals From a Linear Mixed Model
residuals.clmm | Extract The Residuals From a Linear Mixed Model
residuals.lmm | Extract The Residuals From a Linear Mixed Model
residuals.mlmm | Extract The Residuals From a Linear Mixed Model

## -- S --

sampleRem | Sample Longuitudinal Data
scatterplot | Scatterplot for Continuous Variables
schoolL | Simulated Data with 3-level struture (Long Format)
score.lmm | Extract The Score From a Linear Mixed Model
sigma.lmm | Extract The Residuals Variance-Covariance Matrix From a Linear Mixed Model
summarize | Compute summary statistics
summarizeNA | Summarize missing data patterns
summary.lmm | Summary Output for a Linear Mixed Model
summary.mlmm | Summary of Multiple Linear Mixed Models
summary.partialCor | Summary for partial correlation
summary.Wald_lmm | Summary of Testing for a Linear Mixed Models
swabsL | Data From The SWABS Study (Long Format)
swabsW | Data From The SWABS Study (Wide Format)

## -- T --

terms.lmm | Model Terms For Linear Mixed Models
TOEPLITZ | Toeplitz Structure

## -- U --

UN | Unstructured Structure

## -- V --

vasscoresL | Data From The VAS Study (Long Format)
vasscoresW | Data From The VAS Study (Wide Format)
vcov.lmm | Extract The Variance-Covariance Matrix From a Linear Mixed Model
vitaminL | Data From The Vitamin Study (Long Format)
vitaminW | Data From The Vitamin Study (Wide Format)

## -- W --

weights.Wald_lmm | Extract Weights Used to Pool Estimates