GBREL.TXT          Genetic Sequence Data Bank
                         15 December 1990

                     GenBank(R) Release 66.0

                 Distribution Tape Release Notes

  41057 loci, 51306092 bases, from 50908 reported sequences

This document describes the data written on GenBank distribution
tapes. The examples used are from the current release. If you have any
questions or comments about the data bank, the distribution tape, or
this document, please call (415)962-7364 or write to:

GenBank 
c/o IntelliGenetics Inc.
700 East El Camino Real
Mountain View, California 94040
USA

The electronic mail address is: GENBANK@GENBANK.BIO.NET

1. INTRODUCTION

1.1 Release 66.0

Release 66.0 has 41,057 loci representing 51,306,092 bases. Release
65.0 had 39,553 loci with 49,179,285 bases. Release 66.0 thus is 4.3%
larger in bases than Release 65.0. A statistical summary of Release
66.0 is presented in Appendix A.

1.2 Organization of This Document

This introduction notes the changes to GenBank since the last release.
The next section describes the contents of the tape files. The third
section illustrates the formats of the tape files. The fourth section
describes the proposed changes planned for future releases. The fifth
section describes known problems in this release. The last section
contains notes about the administration of GenBank.

1.3 Recent Changes in the Data Bank

1.3.1 Changes in This Release

1.3.1.1 Data from EMBL and the DNA Data Bank of Japan

New sequence data from EMBL Release 23 have been incorporated into
this release of GenBank. Sequence data from Release 7.0 of the DNA
Data Bank of Japan (DDBJ) have also been incorporated into this
release. Entries with accession numbers beginning with the letter `D'
have been created and annotated by DDBJ. Release 66 contains
approximately 467 entries from DDBJ.

1.3.1.2 Changes in the Source and Definition Lines

The Source and Definition lines for new entries are now generated by
the GenBank database software from information in the GenBank
relational database, rather than being entered by an annotator.

These lines include information such as the organism name, the name
and type of the molecule, and the gene product. An example is:

DEFINITION A.auricula-judae (mushroom) 5S ribosomal RNA.
SOURCE A.auricula-judae (mushroom) ribosomal RNA.

In Release 66.0, these lines contain the same information, but have a
format that is less English-like. This change only applies to new
entries.

1.3.1.3 Changes in Locus Names

Several locus names have been changed to make the application of the
organism codes consistent throughout the data bank. These changes are
listed in Appendix B.

1.3.1.4 Date on LOCUS Line

The date on the LOCUS line now indicates the actual date on which the
data first appeared in the GenBank relational database or the date of
the last revision. Previously, this was the date of the release in
which the data first appeared or was revised.

1.3.1.5 Release 66 "Close-of-Data"

The freeze date for data to appear in Release 66 was November 22,
1990. This is the date on which flatfile generation began. The process
of converting the data from the relational database into the flatfile
ASCII format takes several days to complete. New data continue to be
added during this time; if data are added before their division has
been processed, they may appear in the release (even though dated
after the freeze date).

1.3.2 Changes in Earlier Releases

The following changes in GenBank format were implemented in previous
releases and described in their Release Notes. These changes are
described here again for those users who may not have received those
releases.

1.3.2.1 International Feature Table Format (Release 64)

The EMBL Data Library and GenBank, with the assistance of the DNA Data
Bank of Japan, have developed a standard feature table to be
implemented by all three data banks. The new feature table is designed
to be more understandable and useful. The common feature table will
also make software development easier and allow simpler data
conversion between data banks.

The new feature table was implemented in Release 64.0 (June 1990).
Details of the new format are described in a document entitled: `The
DDBJ/EMBL/GenBank feature table: Definition, Version 1.01, September
10, 1988.' Copies of this document are available on request at the
address given on the first page of these release notes.

Section 3.5.11 provides further information on the new feature table
format.

1.3.2.2 Minor Differences in GenBank Format (Release 64)

Beginning in the second quarter of 1990, the GenBank data bank has
been maintained in relational format. The data bank will continue to
be distributed in the standard flatfile format described in this
document. Starting with Release 64.0, the standard flatfile GenBank
data bank (generated from the relational data base tables) contains a
few minor format differences from previous releases. These differences
are described in the remainder of this section.

Information about the relational database format can be requested by
calling (505) 665-2177 or by writing to:

GenBank
Group T-10, Mail Stop K710
Los Alamos National Laboratories
Los Alamos, NM 87545

1.3.2.2.1 Keyword Order

The order of keyword phrases on the KEYWORDS line is alphabetical.

1.3.2.2.2 Accession Number Order

The order of non-primary accession numbers on the ACCESSION line is
not necessarily preserved from one release to the next.

1.3.2.2.3 Reference Order

The order of the references in an entry is not necessarily preserved
from one release to the next.

1.3.2.2.4 Changes in Taxonomy

The taxonomic classification of many organisms was changed to ensure
uniformity throughout the data bank. A few organisms are listed as
unclassified as a result of inconsistencies in the data. The
annotation staff is addressing these inconsistencies.

1.3.2.2.5 Inconsistencies in Reference Information

Inconsistencies in reference information have not been preserved. All
occurrences of a single reference are identical, usually matching the
first occurrence in the data bank.

1.3.2.2.6 Formatting Changes

Certain text fields (for example, definition, comment, title, etc.)
have been reformatted slightly, in some entries. In most cases, the
actual text remains unchanged.

1.3.2.2.7 Comment Field Formatting

Any special formatting in the comment field may not be preserved. This
may be corrected in future releases.

1.3.2.2.8 Reference Line Changes

The reference lines for sites and review papers have been slightly
modified. All of these papers are classified as `sites', with the
original text describing the citation appearing in the comment field.
Also, when a reference is cited elsewhere in an entry, in most cases
the entire citation appears in square brackets. Previously, only the
number of the reference appeared in square brackets.

2. ORGANIZATION OF TAPE FILES

2.1 Tape Formats

The GenBank data bank is available in three formats on three different
physical media (see Section 5.4 for further details on which formats
are available on each medium), and on CD ROM.

GenBank is available on 9-track, unlabelled, industry-standard, ASCII
magnetic tapes. These tapes have been written in fixed-length records
of 80 characters, each with no carriage-return or line-feed
characters. Each record corresponds to one line in the data bank;
trailing blanks have been added to the lines to make them all exactly
80 characters long. (A completely blank line is therefore represented
by 80 blanks.)

The label affixed to the tape reel indicates its block size and
density. If no specifications are received from you, the tape is
written with a fixed block size of 160 records (12,800 characters) and
a density of 6250 bpi (bits per inch). We also offer tapes written at
a density of 1600 bpi and a block size of 40 records (3200
characters).

GenBank is also available as a VAX/VMS Backup saveset (on 9-track
tapes or TK-50 cartridges) or as compressed Unix tar archives (on 9
track tapes and Sun 1/4" QIC 24 format tape cartridges).

The GenBank tape distribution files are also available on ISO-9660
compatible CD ROM. The data are written as ASCII files with variable
length records. Each record corresponds to one line in the data bank
and ends with a carriage return and a line-feed character.

The data on the tapes have both uppercase and lowercase characters.
Upon special request, the unlabelled, 9 track tapes can be written
using uppercase characters only (Section 6.4 specifies which formats
are available in uppercase only).

2.2 Files

GenBank consists of twenty-two files in all magnetic tape
distributions. The list which follows describes each of the files
included in the distribution. In the following sections there are
additional lists indicating the breakdown of files on the various
media and formats.

2.2.1 File Descriptions

1. GBREL.TXT 	- Release notes (this document).
2. GBSDR.TXT 	- Short directory of the data bank.
3. GBNEW.TXT 	- List of new or substantially revised entries.
4. GBACC.IDX 	- Index of the entries according to accession number.
5. GBKEY.IDX 	- Index of the entries according to keyword phrase.
6. GBAUT.IDX 	- Index of the entries according to author.
7. GBJOU.IDX 	- Index of the entries according to journal citation.
8. GBHGM.IDX 	- Index of the entries according to gene symbol.
9. GBDAT.FRM 	- Forms for submitting sequences or corrections to GenBank.
10. GBPRI.SEQ 	- Primate sequence entries.
11. GBROD.SEQ 	- Rodent sequence entries.
12. GBMAM.SEQ 	- Other mammalian sequence entries.
13. GBVRT.SEQ 	- Other vertebrate sequence entries.
14. GBINV.SEQ 	- Invertebrate sequence entries.
15. GBPLN.SEQ 	- Plant sequence entries (including fungi and algae).
16. GBORG.SEQ 	- Eukaryotic organelle sequence entries.
17. GBBCT.SEQ 	- Bacterial sequence entries.
18. GBRNA.SEQ 	- Structural RNA sequence entries.
19. GBVRL.SEQ 	- Viral sequence entries.
20. GBPHG.SEQ 	- Phage sequence entries.
21. GBSYN.SEQ 	- Synthetic and chimeric sequence entries.
22. GBUNA.SEQ 	- Unannotated sequence entries.

2.2.2 Fixed Length Records

Approximately 197 MB of disk space is required for the Release 66.0
files in fixed-length record format. All the files fit on two 6250 bpi
tapes and are divided between the tapes as follows.

Tape 1

GBREL.TXT
GBSDR.TXT
GBNEW.TXT
GBACC.IDX
GBKEY.IDX
GBAUT.IDX
GBJOU.IDX
GBHGM.IDX
GBDAT.FRM
GBPRI.SEQ
GBROD.SEQ
GBMAM.SEQ
GBVRT.SEQ
GBINV.SEQ
GBPLN.SEQ
GBORG.SEQ


Tape 2

GBBCT.SEQ
GBRNA.SEQ
GBVRL.SEQ
GBPHG.SEQ
GBSYN.SEQ
GBUNA.SEQ

At 1600 bpi, seven tapes are required and the files are divided among
the tapes as follows:

Tape 1                           Tape 4

GBREL.TXT                        GBVRT.SEQ
GBSDR.TXT                        GBBCT.SEQ
GBNEW.TXT
GBACC.IDX
GBKEY.IDX                        Tape 5
GBAUT.IDX
GBJOU.IDX                        GBINV.SEQ
GBHGM.IDX                        GBPLN.SEQ
GBDAT.FRM                        GBPHG.SEQ
GBMAM.SEQ

                                 Tape 6
Tape 2
                                 GBVRL.SEQ
GBPRI.SEQ GBSYN.SEQ

Tape 3                           Tape 7

GBROD.SEQ                        GBUNA.SEQ
                                 GBORG.SEQ
                                 GBRNA.SEQ


2.2.3 VAX/VMS Backup Saveset

Saveset files are in directory order rather than in the order shown
for the formats above. The files are in compressed format (See Section
1.3.1.2 for details). Approximately 139 MB of disk space is required
for Release 66.0 files in VAX/VMS Backup Saveset format. The files
archived in the Backup Saveset use variable-length records, not the
80-character fixed-length records described above. All files fit on
one 6250 bpi tape. At 1600 bpi, two tapes are required. The division
of the files between the two tapes was not available at the time these
Release Notes were prepared. The files will appear in the following
order:

AAAREADME.TXT
DCOMPRESS.CLD
DCOMPRESS.EXE
DECMPRESS.COM
GBACC_IDX.Z
GBAUT_IDX.Z
GBBCT_SEQ.Z
GBDAT_FRM.Z
GBHGM_IDX.Z
GBINV_SEQ.Z
GBJOU_IDX.Z
GBKEY_IDX.Z
GBMAM_SEQ.Z
GBNEW_TXT.Z
GBORG_SEQ.Z
GBPHG_SEQ.Z
GBPLN_SEQ.Z
GBPRI_SEQ.Z
GBREL_TXT.Z
GBRNA_SEQ.Z
GBROD_SEQ.Z
GBSDR_TXT.Z
GBSYN_SEQ.Z
GBUNA_SEQ.Z
GBVRL_SEQ.Z
GBVRT_SEQ.Z

NOTE: When the files are uncompressed (as instructed in Section 2.3)
the `.Z' will be removed from the end of the file name and the
characters after the underscore will become the file extension. For
example, `GBACC_IDX.Z' will be named `GBACC.IDX'.

One TK-50 cartridge is required; the files are in directory order and
are compressed as described above.

2.2.4 Unix tar Format

The files are compressed with the Unix compress utility before the tar
command is executed; they must therefore be uncompressed before use
(see Section 2.4 below for details). Approximately 45 MB of disk space
is required for the Release 66.0 files when in the compressed format;
the uncompressed files require approximately 139 MB.

The tar file uses variable length records; the records are not padded
to 80 characters with space characters. To get fixed-length,
80-character records, first uncompress the.Z files. Then use dd with
the conv=block and cbs=80 options set to filter the file. If you pad
the records, it adds approximately 58 MB of disk space.

In the Unix tar file, the files are in directory order rather than in
the order shown for the fixed-length record formats. In addition, the
file names are in lowercase letters. All files fit on one 6250 bpi
tape or Sun cartridge. At 1600 bpi, two tapes are required, and the
files are divided between the tapes as follows:

Unix Tar File Order:

Tape 1

gbacc.idx.Z
gbaut.idx.Z
gbbct.seq.Z
gbdat.frm.Z
gbhgm.idx.Z
gbinv.seq.Z
gbjou.idx.Z
gbkey.idx.Z
gbmam.seq.Z
gbnew.txt.Z
gborg.seq.Z
gbphg.seq.Z


  Tape 2

gbpln.seq.Z
gbpri.seq.Z
gbrel.txt.Z
gbrna.seq.Z
gbrod.seq.Z
gbsdr.txt.Z
gbsyn.seq.Z
gbuna.seq.Z
gbvrl.seq.Z
gbvrt.seq.Z

NOTE: When the files are uncompressed the `.Z' extension is removed
from the file names.

2.2.5 File Sizes

The following table indicates the approximate sizes of the individual
files in this release.  Since minor changes to some of the files may
occur after the release notes are printed, these sizes should not be
used to determine

file integrity.  They are provided as an aid to planning only. The
columns in the table have the following meanings:

(1) - Sizes (in bytes) of the fixed-length record files (described in
Section 2.2.2)

(2) - Sizes (in bytes) of the compressed files included in the Unix
tarfile (Section 2.2.4)

(3) - Sizes (in bytes) of the files in the Unix tarfile after
uncompression (Section 2.2.4)

(4) - Sizes (in blocks) of the compressed files included in the VMS
Backup saveset (Section 2.2.3 and 2.4)

(5) - Sizes (in blocks) of the files in the VMS Backup saveset after
decompression (Sections 2.2.3 and 2.3)


 File                      (1)      (2)     (3)     (4)    (5)__

 GBACC.IDX		3616640	 558701  1641276  1101	 3294
 GBAUT.IDX		9839040	1978063  5541281  4040	11106
 GBBCT.SEQ	       20356960 4995239 15062023 10510	30263
 GBDAT.FRM		  39600    8450    21155    19 	   43
 GBHGM.IDX		 168160   42557   127617    86 	  254
 GBINV.SEQ	       13488080 3145845  9751044  6643	19599
 GBJOU.IDX		4474400	 750259	 2454640  1530	 4928
 GBKEY.IDX		3676480	 866411	 2497752  1754	 4981
 GBMAM.SEQ		6563120	1524109	 4708672  3223	 9463
 GBNEW.TXT		  96800	  16960	   55668    37	  113
 GBORG.SEQ		5763760 1375541  4241530  2893	 8524
 GBPHG.SEQ		2378720	 560271	 1671525  1179	 3363
 GBPLN.SEQ	       14084400 3392955 10325013  7124  20746
 GBPRI.SEQ	       32726160 7473028 23428438 15823  47079
 GBREL.TXT		 367680   96837	  298595   201	  600
 GBRNA.SEQ		4694720	 821816	 2794838  1798	 5636
 GBROD.SEQ             30187600 6727065 21356518 14252  42920
 GBSDR.TXT		3289440	1074335	 3285363  2181	 6578
 GBSYN.SEQ		2838560	 611437	 1841890  1308	 3706
 GBUNA.SEQ	       11974000 2752439  8627808  5717  17370
 GBVRL.SEQ	       18141760 4437537 13647843  9285  27420
 GBVRT.SEQ		7638320	1747319  5408466  3705  10877
 AAAREADME.TXT		                             2      2
 DCOMPRESS.CLD					     4	    4
 DCOMPRESS.EXE					   150	  150
 DECMPRESS.COM					     2	    2

 
Totals		     196404400 44957174 138788955  94567  279021

NOTE: The sizes of the CD ROM files are approximately the same as
those of the uncompressed Unix tar files (Column 3). The addition of
carriage-return/line-feed characters at the end of each line in the CD
ROM files increases the total size of the distribution by
approximately 3 Mb.

2.3 Loading Data Bank Files in VAX/VMS Backup Format

In order to use the VAX/VMS Backup Saveset format, you must be running
release 5.0 or greater of the VMS operating system. If you are not
running release 5.0 or greater, you should order the unlabelled ASCII
format instead of VAX/VMS Backup.

The following command should be used to load the saveset into the
current directory on your disk:

BACKUP/LOG MSA0:GENBANK []

(NOTE: Replace `MSA0' with the identifier for your disk.)

The following command should be used to uncompress the files. NOTE: If
you do not want to keep all of the files, delete those you do not want
before you run the uncompress procedure. The uncompress routine works
on all the files in the directory that have a `.Z' extension.

@DECMPRESS

The following commands were used to create the VAX/VMS Backup Saveset.
NOTE: The `...' indicates that the following line is a continuation
and should be typed without a break.

For 6250 bpi tape: BACKUP/DENSITY=6250/BUFFER=5/VERIFY/INTERCHANGE/...

LIST=GB.LST GB1:[GENBANK.PROD]GB*.* TAPE:GENBANK

For 1600 bpi tape: BACKUP/DENSITY=1600/BUFFER=5/VERIFY/INTERCHANGE/...

LIST=GB.LST GB1:[GENBANK.PROD]GB*.* TAPE:GENBANK

For TK-50 cartridge: BACKUP/BUFFER=5/VERIFY/INTERCHANGE/...

LIST=GB.LST GB1:[GENBANK.PROD]GB*.* TAPE:GENBANK

2.4 Loading Data Bank Files in Unix tar Format

The following commands should be used to load the Unix tar files into
the current directory on your disk:

tar xvfb /dev/rmt8 126 gb*.Z

uncompress gb*.Z

(NOTE: Replace `rmt8' with the identifier for your device.)

The following command was used to write the tarfile on the
distribution tape:

For 6250 and 1600 bpi tapes (execute the command twice, once for each
tape, for 1600 bpi):

tar cvfb /dev/rmt8 20 gb*.Z

For Sun cartridge:

tar cvfb /dev/rst8 126 gb*.Z

3. FILE FORMATS

3.1 File Header Information

Each of the twenty-two files on the distribution tape begins with the
same header, except for the first line, which contains the file name,
and the sixth line, which contains the title of the file. The first
line of the file contains the file name in character positions 1 to 9
and the full data bank name (Genetic Sequence Data Bank) starting in
column 20. The brief names of the files in this release are listed in
section 2.2.

The second line contains the date of the current release in the form
`day month year', beginning in position 26. The fourth line contains
the current GenBank release number. The release number appears in
positions 41 to 45 and consists of two numbers separated by a decimal
point. The number to the left of the decimal is the major release
number. The digit to the right of the decimal indicates the version of
the major release; it is zero for the first version. The sixth line
contains a title for the file. The eighth line lists the number of
entries (loci), number of bases (or base pairs), and number of reports
of sequences in this release of GenBank. These numbers are
right-justified at fixed positions. The number of entries appears in
positions 1 to 7, the number of bases in positions 15 to 22, and the
number of reports in positions 36 to 40. (There are more reports of
sequences than entries since reported sequences that overlap or
duplicate each other are combined into single entries.) The third,
fifth, seventh, and ninth lines are blank.

1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

GBACC.IDX            Genetic Sequence Data Bank
                         15 December 1990

                     GenBank(R) Release 66.0

                     Accession Number Index

  41057 loci, 51306092 bases, from 50908 reported sequences

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 1. Sample File Header

3.2 Directory Files

3.2.1 Short Directory File

The short directory file contains brief descriptions of all of the
sequence entries contained in this release.  These descriptions are in
thirteen groups, one group for each of the thirteen sequence entry
data files. The first record at the beginning of a group of entries
contains the name of the group in uppercase characters, beginning in
position 21. The organism groups are PRIMATE, RODENT, OTHER MAMMAL,
OTHER VERTEBRATE, INVERTEBRATE, PLANT, ORGANELLE, BACTERIAL,
STRUCTURAL RNA, VIRAL, PHAGE, SYNTHETIC, or UNANNOTATED. The second
record is blank.

Each record in the short directory contains the sequence entry name
(LOCUS) in the first 12 positions, followed by a brief definition of
the sequence beginning in column 13. The definition is truncated (at
the end of a word) to leave room at the right margin for at least one
space, the sequence length, and the letters `bp'. The length of the
sequence is printed right-justified to column 77, followed by the
letters `bp' in columns 78 and 79. The next-to-last record for a group
has `ZZZZZZZZZZ' in its first ten positions (where the entry name
would normally appear). The last record is a blank line. An example of
the short directory file format, showing the descriptions of the last
entries in the Other Vertebrate sequence data file and the first
entries of the Invertebrate sequence data file, is reproduced below:

1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

ZEFHOX21    Zebrafish Hox-2.1 gene homologue (ZF-21).  291bp
ZEFRZF21    Zebrafish mRNA for homeotic protein ZF-21.  2073bp
ZEFZF54     Zebrafish homeotic gene ZF-54.  246bp
ZEFZFEN     Zebrafish engrailed-like homeobox sequence.  327bp
ZZZZZZZZZZ

                    INVERTEBRATE

ACAACTI     Amoeba (A. castellanii) actin gene-i.  1571bp
ACAJJE      A.castellanii 18S ribosomal RNA.  241bp
ACAJJEA     A.castellanii 18S ribosomal RNA.  258bp
ACAJJEB     A.castellanii 18S ribosomal RNA.  257bp

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 2. Short Directory File

3.2.2 New and Updated Entry File

The directory of new and updated entries is a list of those entries
that have been newly added or that have undergone substantive revision
in this release. These entries are listed in the same order in which
they appear in the actual data files; they are divided into thirteen
groups, one group for each of the thirteen sequence entry data files.
The first record at the beginning of a group of entries designates
that group, beginning in position 21. The second record is blank and
the third record has asterisks in its first ten positions. Within each
group, the entries are listed alphabetically. For each entry, the new
and updated entry file gives the information included under the LOCUS
and DEFINITION keywords in the same format in which they appear in the
actual sequence entry; these categories are described in section
3.5.2. After the last record of an entry comes a record containing
asterisks in its first ten positions. At the end of each group, a
dummy entry contains only a LOCUS line with the entry name
`ZZZZZZZZZZ'. Therefore, the next-to-last record has ten asterisks in
its first ten positions; the last record of the group is blank.

The following excerpt from the current release shows the last new or
revised entry from the Other Vertebrate sequence data file, followed
by the first new or revised entry from the Invertebrate sequence data
file:

1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

**********
LOCUS       RANCRYR23 266 bp ds-DNA VRT 20-SEP-1990
DEFINITION  R.temporaria rho-crystallin gene, exon X.
**********
LOCUS       ZZZZZZZZZZ
**********

                    INVERTEBRATE

**********
LOCUS       ACAJJE 241 bp ss-rRNA INV 05-NOV-1990
DEFINITION  A.castellanii 18S ribosomal RNA.
**********

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 3. New and Updated Entry File

3.3 Index Files

There are five files containing indices to the entries in this
release:

Accession number index file
Keyword phrase index file
Author name index file
Journal citation index file
Gene symbol index file

The index keys (accession numbers, keywords, authors, journals, and
gene symbols.) of an index are sorted alphabetically. (The index keys
for the keyword phrases and author names appear in uppercase
characters even though they appear in mixed case in the sequence
entries.) Under each index key, the names of the sequence entries
containing that index key are listed alphabetically. Each sequence
name is also followed by its data file division and primary accession
number. The following codes are used to designate the data file
divisions:

 1. PRI - primates
 2. ROD - rodents
 3. MAM - other mammals
 4. VRT - other vertebrates
 5. INV - invertebrates
 6. PLN - plants, fungi, and algae
 7. ORG - organelles
 8. BCT - bacteria
 9. RNA - structural RNAs
10. VRL - viruses
11. PHG - bacteriophage
12. SYN - synthetic sequences
13. UNA - unannotated sequences

The index key begins in column 1 of a record. An 11-character field
for the sequence entry name starts in position 14 of a record,
followed by a 3-character field for the data file division, starting
at position 25 and ending at position 27, and a 6-character field for
the primary accession number, starting at position 29 and ending at
position 34. All entries in the fields are left-justified.

Beginning at positions 36 and 58, the three fields repeat, so three
sets of sequence information can appear in one record. If there are
more than three entry names, the next records are used; the index key
is not repeated. For the accession number and human gene symbol index
files, the entry names begin in the same record as the index key,
since the key is always less than 12 characters. In the other index
files, the entry names begin on the record following the index key
record.

3.3.1 Accession Number Index File

Accession numbers consist of a single letter followed by five digits.
They provide an unchanging designation for the data with which they
are associated, and we encourage you to cite accession numbers
whenever you refer to data from the data bank. The primary accession
number is the first accession number of an entry. It is unique to that
entry. Citation of that number will enable other investigators to
locate the data no matter what entry name changes or other data bank
reorganizations may occur. The accession numbers, however, carry no
intrinsic information about the data.

In addition to the primary accession number, some entries have
secondary accession numbers. Secondary accession numbers arise for a
number of reasons. For example, a single accession number may
initially be assigned to the sequence in an article. If it is later
discovered that the sequence must be entered into the data bank as
multiple entries, each entry would receive a new primary accession
number; the previous accession number would appear as the secondary
accession number in each entry.

The following excerpt from the accession number index file illustrates
the format of the index:

1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

J00316       HUMTBB11P  PRI J00316
J00317       HUMTBB46P  PRI J00317
J00318       HUMUG1     PRI J00318
J00319       HUMUG1PA   PRI J00319
J00320       HUMVIPMR1  PRI L00154 HUMVIPMR2  PRI L00155 HUMVIPMR3  PRI L00156
             HUMVIPMR4  PRI L00157 HUMVIPMR5  PRI L00158
J00321       BABA1AT    PRI J00321
J00322       CHPRSA     PRI J00322
J00323       AGMRSASPC  PRI J00323
J00324       BABATIII   PRI J00324

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 4. Accession Number Index File

If the same accession number is found in more than one entry (a result
of the infrequent occasions when a single entry is split into two or
more separate entries), then the additional entries and groups in
which the number appears are also given.

3.3.2 Keyword Phrase Index File

Keyword phrases consist of names for gene products and other
characteristics of sequence entries. There are approximately 12,000
keyword phrases. An excerpt from the keyword phrase index file is
shown below:

1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

DNA GYRASE
             ECOGYRA    BCT X06744 ECORECF  BCT K02179 ECORECFA  BCT X04341
DNA HELICASE
             ECOHELIV   BCT J04726 ECOUVRD   BCT X00738
DNA INVERTASE
             ECOPIN     BCT K00676 ECOPINP   BCT K03521 PMUGINMOM  PHG V01463
             STAINVSA   BCT M36694
DNA LIGASE
             ECOLIG     BCT M24278 ECOLIGA   BCT M30255 PT4G30     PHG X00039
             PT6LIG55   PHG M38465 PT7CG     PHG J02518 YSCCDC9    PLN X03246
             YSPCDC17   PLN X05107
DNA LIGASE I
             HUMLIGAA   PRI M36067
DNA MATURATION
             HS1CAS     VRL M22962
DNA METHYLASE
             HEHMTS     BCT J02677
DNA METHYLATION
             HEHMTS     BCT J02677 HUMSPM1   PRI X06585 HUMSPM2    PRI X06586
             HUMSPM3    PRI X06587 HUMSPM4   PRI X06588 HUMSPM5    PRI X07490
             HUMSPM6    PRI X07491 HUMSPM7   PRI X07492 HUMSPM8    PRI X07493
             HUMSPM9    PRI X07494

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 5. Keyword Phrase Index File



3.3.3 Author Name Index File

The author name index file lists all of the author names that appear
in the citations. An excerpt from the author name index file is shown
below:



1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

JACKOWSKI,S.
             ECOPANF    BCT M30953
JACKS,C.M.
             MUSRP32A   ROD M35397 MUSRPL32A  ROD M23453
JACKS,T.
             MMTGXPPR   VRL M16766
JACKSON,A.
             BOVMHBOLA  MAM M21044 BOVMHBOLB  MAM M21043
JACKSON,A.O.
             BSMRVPS    SYN M28702 M23023     UNA M23023 MBSRNAG    VRL M11511
             MBSRNAGND  VRL M16577 MBSRNAGSA  VRL M11509 MBSRNAGSB  VRL M11510
             MBSRNAGT   VRL M16576 SAPCAP     VRL M17182 SYENCP     VRL M17210
             SYERNA     VRL M13950 SYESC6     VRL M35689

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 6. Author Name Index File



3.3.4 Journal Citation Index File

The journal citation index file lists all of the citations that appear
in the references. All citations are truncated to 80 characters. An
excerpt from the citation index file is shown below:



1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

(IN) THE CELL NUCLEUS, VOLUME VIII: 261-305; ACADEMIC PRESS, NEW YORK (1981)
             RATUR5A    RNA K00783
(IN) THE IMMUNE SYSTEM: 132-138; S. KARGER, NEW YORK (1981).
             HUMIGHVX   PRI M35415
(IN) THE LENS: TRANSPARANCY AND CATARACT: 171-179; EURAGE, RIJSWIJK (1986)
             RANCRYG2A  VRT K02264 RANCRYG4A  VRT K02266 RANCRYG5A  VRT M22529
             RANCRYG6A  VRT M22530 RANCRYR    VRT X00659
(IN) UCLA SYMP. MOL. CELL. BIOL. NEW SER., VOL. 77: 339-352; ALAN R. LISS, INC.
             BOVTRNB2A  MAM M36431 HUMTRNB    PRI M36429 HUMTRNB1   PRI M36430
(IN) UCLA SYMPOSIA: 575-584; ALAN R. LISS, INC., NEW YORK (1987)
             PFAHGPRT   INV M54896
(IN) VIRUS RESEARCH. PROCEEDINGS OF 1973 ICN-UCLA SYMPOSIUM: 533-544; ACADEMIC
             LAMCG      PHG J02459
ACTA BIOCHIM. POL. 24, 301-318 (1977)
             LUPTRFJ    RNA K00345 LUPTRFN    RNA K00346

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 7. Journal Citation Index File

3.3.5 Cross-Reference To Gene Symbol Libraries

The gene symbol file contains the gene symbols used in the Genome Data
Base and other gene symbols, such as those for the E. coli genes. The
gene symbols are found in the feature table and have the form:
/gene="gene symbol"; an example is found in section 3.5.11.5. An
example of the format of the gene symbol index file follows:

1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

INFC         ECOHIMA    BCT K02844 ECOTHRINF  BCT V00291
INHA         HUMINHA    PRI M13981 HUMINHAA   PRI M13144 HUMINHAG1  PRI X04445
             HUMINHAG2  PRI X04446 HUMINHAG2  PRI X04446
INHBA        HUMINHBA   PRI M13436
INHBB        HUMINHBB   PRI M13437 HUMINHBB1  PRI M31668 HUMINHBB2  PRI M31669
             HUMINHBB2  PRI M31669 HUMINHIB   PRI M31682
INS          HUMINS01   PRI J00265 HUMINS01   PRI J00265 HUMINSPR   PRI M10039
             HUMINV2    PRI M13903
INSR         HUMINSR    PRI M10051 HUMINSR01  PRI M23100 HUMINSR02  PRI M32823
             HUMINSR03  PRI M32824 HUMINSR04  PRI M32825 HUMINSR05  PRI M32826
             HUMINSR06  PRI M32827 HUMINSR07  PRI M32828 HUMINSR08  PRI M32829
             HUMINSR09  PRI M32830 HUMINSR10  PRI M32831 HUMINSR11  PRI M32832
             HUMINSR12  PRI M32833 HUMINSR13  PRI M32834 HUMINSR14  PRI M32835
             HUMINSR15  PRI M32836 HUMINSR16  PRI M32837 HUMINSR17  PRI M32838
             HUMINSR18  PRI M32839 HUMINSR19  PRI M32840 HUMINSR20  PRI M32841
             HUMINSR21  PRI M32842 HUMINSR22  PRI M32972 HUMINSRA   PRI X02160
             HUMINSRA01 PRI M27195 HUMINSRA02 PRI M27197 HUMINSRB   PRI J03466
             HUMINSRC   PRI M29929 HUMINSRD   PRI M29930 HUMINSRMUT PRI M27196
             HUMIRSRE   PRI J05043
INT1         HUMINT1G   PRI X03072
INT1L1       HUMIRP     PRI X07876
IRGA         VCHIRGA    BCT M37773 VCHIRGA    BCT M37773 VCHIRGA    BCT M37773
             VCHIRGA    BCT M37773 VCHIRGA    BCT M37773 VCHIRGB    BCT M55988
             VCHIRGB    BCT M55988

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 8. Gene Symbol Index File


3.4 GenBank Data Submission Form and Error/Suggestion Report Form

The distribution tape includes a data submission form in the file
GBDAT.FRM. Due to the large volume of new sequence data, we encourage
authors to complete this form and return it to the address listed on
the form. This will enable data to be entered more quickly into the
data bank.

You can complete the form with any text editor. You can send the
completed form to GenBank on tape or floppy diskette, or
electronically via INTERNET or BITNET (the electronic mail address is:
gb-sub%life@lanl.gov). We can use information saved on any computer
medium from any computer system. You can also print the form, fill it
in by hand, and send it to the mailing address given at the beginning
of the form.

The second form in this file is the GenBank Error/Suggestion Report
Form. It is separated from the Data Submission Form by a form-feed
character (<CTRL>L, ASCII octal value 014, ASCII decimal value 12). We
encourage all GenBank users to report any errors to the data bank
staff using this form. Like the GenBank Data Submission Form, it may
be printed and filled in by hand and sent by mail to the address given
at the beginning of the form. It may also be filled out using a text
editor and sent to GenBank by electronic mail at the address given at
the top of the form.

If you have an IBM PC or compatible computer, or a Macintosh personal
computer, we request that you use the Authorin program for submitting
sequences to the data bank. See section 5.5 for information about
obtaining the Authorin program at no charge.

3.5 Sequence Entry Files

The distribution tape contains thirteen sequence entry data files, one
for each division of GenBank. Each file contains the entries for one
group of organisms.

3.5.1 File Organization

Each of these files has the same format and consists of two parts:
header information (described in section 3.1) and sequence entries for
that division (described in the following sections).

3.5.2 Entry Organization

In the second portion of a sequence entry file (containing the
sequence entries for that division), each record (line) consists of
two parts. The first part is found in positions 1 to 10 and may
contain:

1. A keyword, beginning in column 1 of the record (e.g., REFERENCE is
a keyword).

2. A subkeyword beginning in column 3, with columns 1 and 2 blank
(e.g., AUTHORS is a subkeyword of REFERENCE).

3. Blank characters, indicating that this record is a continuation of
the information under the keyword or subkeyword above it.

4. A code, beginning in column 5, indicating the nature of an entry
(feature key) in the FEATURES table; these codes are described in
Section 3.5.11.1 below.

5. A number, ending in column 9 of the record. This number occurs in
the portion of the entry describing the actual nucleotide sequence and
designates the numbering of sequence positions.

6. Two slashes (//) in positions 1 and 2, marking the end of an entry.

The second part of each sequence entry record contains the information
appropriate to its keyword, in positions 13 to 80 for keywords and
positions 11 to 80 for the sequence.

The following is a brief description of each entry field. Detailed
information about each field may be found in Sections 3.5.4 to 3.5.13.

LOCUS - A short unique name for the entry, chosen to suggest the
sequence's definition. Mandatory keyword/exactly one record.

DEFINITION - A concise description of the sequence. Mandatory
keyword/one or more records.

ACCESSION - The primary accession number is a unique, unchanging
code assigned to each entry. (Please use this code when citing
information from GenBank.) Mandatory keyword/one or more records.

KEYWORDS - Short phrases describing gene products and other
information about an entry. Mandatory keyword in all annotated
entries/one or more records.

SEGMENT - Information on the order in which this entry appears in a
series of discontinuous sequences from the same molecule. Optional
keyword (only in segmented entries)/exactly one record.

SOURCE - Common name of the organism or the name most frequently used
in the literature. Mandatory keyword in all annotated entries/one or
more records/includes one subkeyword.

   ORGANISM - Formal scientific name of the organism (first line)
   and taxonomic classification levels (second and subsequent lines).
   Mandatory subkeyword in all annotated entries/two or more records.

REFERENCE - Citations for all articles containing data reported
in this entry. Includes four subkeywords and may repeat. Mandatory
keyword/one or more records.

   AUTHORS - Lists the authors of the citation. Mandatory
   subkeyword/one or more records.

   TITLE - Full title of citation. Optional subkeyword (present
   in all but unpublished citations)/one or more records.

   JOURNAL - Lists the journal name, volume, year, and page
   numbers of the citation. Mandatory subkeyword/one or more records.

   STANDARD - Lists information about the degree to which the
   entry has been annotated and the level of review to which it has been
   subjected. Mandatory subkeyword/exactly one record.

COMMENT - Cross-references to other sequence entries, comparisons to
other collections, notes of changes in LOCUS names, and other remarks.
Optional keyword/one or more records/may include blank records.

FEATURES - Table containing information on portions of the
sequence that code for proteins and RNA molecules and information on
experimentally determined sites of biological significance. Optional
keyword/one or more records.

BASE COUNT - Summary of the number of occurrences of each base
code in the sequence. Mandatory keyword/exactly one record.

ORIGIN - Specification of how the first base of the reported sequence
is operationally located within the genome. Where possible, this
includes its location within a larger genetic map. Mandatory
keyword/exactly one record.

       - The ORIGIN line is followed by sequence data (multiple
records).

// - Entry termination symbol. Mandatory at the end of an
entry/exactly one record.


3.5.3 Sample Sequence Data File

An example of a complete sequence entry file follows. (This example
has only two entries.) Note that in this example, as throughout the
data bank, numbers in square brackets indicate items in the REFERENCE
list. For example, in ACARR58S, [1] refers to the paper by Mackay, et
al.

1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

GBSMP.SEQ            Genetic Sequence Data Bank
                         15 December 1990

                     GenBank(R) Release 66.0

                    Structural Rna Sequences

      2 loci, 280 bases, from 2 reported sequences

LOCUS AAURRA 118 bp ss-rRNA RNA 16-JUN-1986
DEFINITION A.auricula-judae (mushroom) 5S ribosomal RNA.
ACCESSION K03160
KEYWORDS 5S ribosomal RNA; ribosomal RNA.
SOURCE A.auricula-judae (mushroom) ribosomal RNA.
  ORGANISM Auricularia auricula-judae
            Eukaryota; Plantae; Thallobionta; Basidiomycotina;
            Phragmobasidiomycetes; Heterobasidiomycetidae; Eutremellales;
            Auriculariaceae; Auricularia; auricula-judae.
REFERENCE 1 (bases 1 to 118)
  AUTHORS Huysmans,E., Dams,E., Vandenberghe,A. and De Wachter,R.
  TITLE The nucleotide sequences of the 5S rRNAs of four mushrooms and
            their use in studying the phylogenetic position of basidiomycetes
            among the eukaryotes
  JOURNAL Nucleic Acids Res. 11, 2871-2880 (1983)
  STANDARD full staff_review
FEATURES Location/Qualifiers
     rRNA            1..118
                     /note="5S ribosomal RNA"
BASE COUNT 27 a 34 c 34 g 23 t
ORIGIN 5' end of mature rRNA.
        1 atccacggcc ataggactct gaaagcactg catcccgtcc gatctgcaaa gttaaccaga
       61 gtaccgccca gttagtacca cggtggggga ccacgcggga atcctgggtg ctgtggtt
//
LOCUS ACARR58S 162 bp ss-rRNA RNA 15-MAR-1989
DEFINITION A.castellanii (amoeba) 5.8S ribosomal RNA.
ACCESSION K00471
KEYWORDS 5.8S ribosomal RNA; ribosomal RNA.
SOURCE A.castellani (amoeba; strain ATCC 30010) rRNA.
  ORGANISM Acanthamoeba castellanii
            Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina;
            Rhizopoda; Lobosa; Gymnamoeba; Amoebida; Acanthopodina;
            Acanthamoebidae; Acanthamoeba; castellanii.
REFERENCE 1 (bases 1 to 162)
  AUTHORS Mackay,R.M. and Doolittle,W.F.
  TITLE Nucleotide sequences of AcanthamoebA.castellanii 5S and 5.8S
            ribosomal ribonucleic acids: Phylogenetic and comparative
            structural analyses
  JOURNAL Nucleic Acids Res. 9, 3321-3334 (1981)
  STANDARD simple staff_review
COMMENT [1] also sequenced A.castellanii 5S rRNA <K03160>.
FEATURES Location/Qualifiers
     rRNA            1..162
                     /note="5.8S rRNA"
BASE COUNT 40 a 39 c 44 g 39 t
ORIGIN 5' end of mature rRNA.
        1 aactcctaac aacggatatc ttggttctcg cgaggatgaa gaacgcagcg aaatgcgata
       61 cgtagtgtga atcgcaggga tcagtgaatc atcgaatctt tgaacgcaag ttgcgctctc
      121 gtggtttaac cccccgggag cacgttcgct tgagtgccgc tt
//

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 9. Sample Sequence Data File


3.5.4 LOCUS Format

The pieces of information contained in the LOCUS record are always
found in fixed positions. The locus name (or entry name), which is
always ten characters or less, begins in position 13. The locus name
is designed to help group entries with similar sequences: the first
three characters usually designate the organism; the fourth and fifth
characters can be used to show other group designations, such as gene
product; for segmented entries the last character is one of a series
of sequential integers.

The number of bases or base pairs in the sequence ends in position 29.
The letters `bp' are in positions 31 to 32. Positions 34 to 36 give
the number of strands of the sequence. Positions 37 to 40 give the
topology of molecule sequenced. If the sequence is of a special type,
a notation (such as `circular') is included in positions 43 to 52.

GenBank sequence entries are divided among thirteen taxonomic
divisions. Each entry's division is identified by a three-letter code
in positions 53 to 55. See Section 3.3 for the division codes.

Positions 63 to 73 of the record contain the date the entry was
entered or underwent any substantial revisions, such as the addition
of newly published data, in the form dd-MMM-yyyy.

The detailed format for the LOCUS record is as follows:

Positions 	Contents

1-12	LOCUS
13-22	Locus name
23-29	Length of sequence, right-justified
31-32	bp
34-36	Blank, ss- (single-stranded), ds- (double-stranded), or
	 ms- (mixed-stranded)
37-40	Blank, DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA),
	mRNA (messenger RNA), or uRNA (small nuclear RNA)
43-52	Blank (implies linear), circular, or tandem
53-55	The division code (see Section 3.3)
63-73	Date, in the form dd-MMM-yyyy (e.g., 15-DEC-1990)

3.5.5 DEFINITION Format

The DEFINITION record gives a brief description of the sequence,
proceeding from general to specific. It starts with the common name of
the source organism, then gives the criteria by which this sequence is
distinguished from the remainder of the source genome, such as the
gene name and what it codes for, or the protein name and mRNA, or some
description of the sequence's function (if the sequence is
non-coding). If the sequence has a coding region, the description may
be followed by a completeness qualifier, such as cds (complete coding
sequence). The length is limited to three lines and the last line must
end with a period.

3.5.6 ACCESSION Format

This field contains a series of six-character identifiers (accession
numbers: first character a letter, the remainder digits). The primary
(first) accession number occupies positions 13 to 18; subsequent
accession numbers occupy positions 20 to 25, 27 to 32, 34 to 39, 41 to
46, 48 to 53, 55 to 60, 62 to 67, and 69 to 74.  No punctuation occurs
between accession numbers or after the final accession number;
accession numbers are separated only by one space.

3.5.7 KEYWORDS Format

The KEYWORDS field does not appear in unannotated entries, but is
required in all annotated entries. Keywords are separated by
semicolons; a keyword may be a single word or a phrase consisting of
several words. Each line in the keywords field ends in a semicolon;
the last line ends with a period. If no keywords are included in the
entry, the KEYWORDS record contains only a period.

3.5.8 SEGMENT Format

The SEGMENT keyword is used when two (or more) entries of known
relative orientation are separated by a short (<10 kb) stretch of DNA.
It is limited to one line of the form `n of m', where `n' is the
segment number of the current entry and `m' is the total number of
segments.

3.5.9 SOURCE Format

The SOURCE field consists of two parts. The first part is found after
the SOURCE keyword and contains free-format information including an
abbreviated form of the organism name followed by a molecule type;
multiple lines are allowed, but the last line must end with a period.
The second part consists of information found after the ORGANISM
subkeyword. The formal scientific name for the source organism (genus
and species, where appropriate) is found on the same line as ORGANISM.
The records following the ORGANISM line list the taxonomic
classification levels, separated by semicolons and ending with a
period.

3.5.10 REFERENCE Format

The REFERENCE field consists of five parts: the keyword REFERENCE, and
the subkeywords AUTHORS, TITLE (optional), JOURNAL and STANDARD.

The REFERENCE line contains the number of the particular reference and
(in parentheses) the range of bases in the sequence entry reported in
this citation. Additional prose notes may also be found within the
parentheses. The numbering of the references does not reflect
publication dates or priorities.

The AUTHORS line lists the authors in the order in which they appear
in the cited article. Last names are separated from initials by a
comma (no space); there is no comma before the final `and'. The list
of authors ends with a period.

The TITLE line is an optional field, although it appears in the
majority of entries. It does not appear in unpublished sequence data
entries that have been deposited directly into the GenBank data bank,
the EMBL Nucleotide Sequence Data Library, or the DNA Data Bank of
Japan. The TITLE field does not end with a period.

The JOURNAL line gives the appropriate literature citation for the
sequence in the entry. The word `Unpublished' will appear after the
JOURNAL subkeyword if the data did not appear in the scientific
literature, but was directly deposited into the data bank. For
published sequences the JOURNAL line gives the Thesis, Journal, or
Book citation, including the year of publication, the specific
citation, or In press.

The STANDARD line contains information about:

The degree to which the entry has been annotated:

`unannotated' for unannotated entries which include citation and
sequence only.

`simple' for unannotated entries which include the organism name and
protein coding regions as well as the citation and sequence.

`full' for fully annotated entries which include all the data items
that were described by the author.

The level of modification and review:

`automatic' for data subjected only to automated (i.e., software)
checks.

`staff_entry' for data that passed both automated and annotator
checks.

`staff_review' for data that passed previous review levels as well as
a review by senior annotators and/or outside experts.

The format for the STANDARD line is: annotation degree <SPACE> review level


3.5.11 FEATURES Format

This release uses the new feature table format. This format has been
designed jointly by GenBank, the EMBL Nucleotide Sequence Data
Library, and the DNA Data Bank of Japan, and will be common to all
three data banks.

The feature table contains information about genes and gene products,
as well as regions of biological significance reported in the
sequence. The feature table contains information on regions of the
sequence that code for proteins and RNA molecules. It also enumerates
differences between different reports of the same sequence, and
provides cross-references to other data collections, as described in
more detail below.

The first line of the feature table is a header that includes the
keyword `FEATURES' and the column header `Location/Qualifier.' Each
feature consists of a descriptor line containing a feature key and a
location (see sections below for details). If the location does not
fit on this line, a continuation line may follow. If further
information about the feature is required, one or more lines
containing feature qualifiers may follow the descriptor line.

The feature key begins in column 6 and may be no more than 15
characters in length. The location begins in column 22. Feature
qualifiers begin on subsequent lines at column 22. Location,
qualifier, and continuation lines may extend from column 22 to 80.

Feature tables are optional. However, a feature table must include one
header line and at least one feature descriptor line.

The sections below provide a brief introduction to the new feature
table format. For a thorough description of the new feature table
format, see the document `The DDBJ/EMBL/GenBank Feature Table:
Definition.' If you would like a copy of this publication, contact
GenBank at the address shown on the front page of these Release Notes.

3.5.11.1 Feature Key Names

The first column of the feature descriptor line contains the feature
key. It starts at column 6 and can continue to column 20. The list of
valid feature keys is shown below.

allele		Related strain contains alternative gene form
attenuator	Sequence related to transcription termination
CAAT_signal	`CAAT box' in eukaryotic promoters
CDS		Sequence coding for amino acids in protein (includes stop
                codon)
cellular	Region of cellular DNA
conflict	Independent determinations differ
D-loop 		Displacement loop
enhancer	Cis-acting enhancer of promoter function
exon		Region that codes for part of spliced mRNA
GC_signal	`GC box' in eukaryotic promoters
iDNA		Intervening DNA eliminated by recombination
insertion_seq	Insertion sequence (IS), a small transposon
intron		Transcribed region excised by mRNA splicing
LTR		Long terminal repeat
mat_peptide	Mature peptide coding region (does not include stop codon)
misc_binding	Miscellaneous binding site
misc_difference	Miscellaneous difference feature
misc_feature	Region of biological significance that cannot be described by
                any other feature
misc_recomb	Miscellaneous recombination feature
misc_RNA	Miscellaneous transcript feature not defined by other RNA keys
misc_signal	Miscellaneous signal
misc_structure	Miscellaneous DNA or RNA structure
modified_base	The indicated base is a modified nucleotide
mRNA		Messenger RNA
mutation 	A mutation alters the sequence here
old_sequence	Presented sequence revises a previous version
polyA_signal	Signal for cleavage & polyadenylation
polyA_site	Site at which polyadenine is added to mRNA
precursor_RNA	Any RNA species that is not yet the mature RNA product
prim_transcript	Primary (unprocessed) transcript
primer_bind	Non-covalent primer binding site
promoter	A region involved in transcription initiation
protein_bind	Non-covalent protein binding site on DNA or RNA
provirus	Proviral sequence
RBS		Ribosome binding site
rep_origin	Replication origin for duplex DNA
repeat_region	Sequence containing repeated subsequences
repeat_unit	One repeated unit of a repeat_region
rRNA		Ribosomal RNA
satellite	Satellite repeated sequence
scRNA		Small cytoplasmic RNA
sig_peptide	Signal peptide coding region
snRNA		Small nuclear RNA
stem_loop	Hair-pin loop structure in DNA or RNA
TATA_signal	`TATA box' in eukaryotic promoters
terminator	Sequence causing transcription termination
transit_peptide	Transit peptide coding region
transposon	Transposable element (TN)
tRNA 		Transfer RNA
unsure		Authors are unsure about the sequence in this region
variation 	A related population contains stable mutation
virion		Virion (encapsidated) viral sequence
- (hyphen)	Placeholder
-10_signal	`Pribnow box' in prokaryotic promoters
-35_signal	`-35 box' in prokaryotic promoters
3'clip		3'-most region of a precursor transcript removed in processing
3'UTR		3' untranslated region (trailer)
5'clip		5'-most region of a precursor transcript removed in processing
5'UTR		5' untranslated region (leader)

3.5.11.2 Feature Location

The second column of the feature descriptor line designates the
location of the feature in the sequence. The location descriptor
begins at position 22. Several conventions are used to indicate
sequence location.

Base numbers in location descriptors refer to numbering in the entry,
which is not necessarily the same as the numbering scheme used in the
published report. The first base in the presented sequence is numbered
base 1. Sequences are presented in the 5' to 3' direction.

Location descriptors can be one of the following:

1. A single base;
2. A contiguous span of bases;
3. A site between two bases;
4. A single base chosen from a range of bases;
5. A single base chosen from among two or more specified bases;
6. A joining of sequence spans;
7. A reference to an entry other than the one to which the feature
   belongs (i.e., a remote entry), followed by a location descriptor
   referring to the remote sequence;
8. A literal sequence (a string of bases enclosed in quotation marks).

A site between two residues, such as an endonuclease cleavage site, is
indicated by listing the two bases separated by a carat (e.g., 23^24).

A single residue chosen from a range of residues is indicated by the
number of the first and last bases in the range separated by a single
period (e.g., 23.79). The symbols < and > indicate that the end point
of the range is beyond the specified base number.

A contiguous span of bases is indicated by the number of the first and
last bases in the range separated by two periods (e.g., 23..79). The
symbols < and > indicate that the end point of the range is beyond the
specified base number. Starting and ending positions can be indicated
by base number or by one of the operators described below.

Operators are prefixes that specify what must be done to the indicated
sequence to locate the feature. The following are the operators
available, along with their most common format and a description.

complement (location): The feature is complementary to the location
indicated. Complementary strands are read 5' to 3'.

join (location, location, .. location): The indicated elements should
be placed end to end to form one contiguous sequence.

order (location, location, .. location): The elements are found in the
specified order in the 5' to 3' direction, but nothing is implied
about the rationality of joining them.

group (location, location, .. location): The elements are related and
should be grouped together, but no order is implied.

one-of (location, location, .. location): The element can be any one,
but only one, of the items listed.

replace (location, location): The first location indicated should be
replaced by the sequence from the second location; used for
insertions, deletions, and variants.

3.5.11.3 Feature Qualifiers

Qualifiers provide additional information about features. They take
the form of a slash (/) followed by a qualifier name and, if
applicable, an equal sign (=) and a qualifier value. Feature
qualifiers begin at column 22.

Qualifiers convey many types of information. Their values can,
therefore, take several forms:

1. Free text;
2. Controlled vocabulary or enumerated values;
3. Citations or reference numbers;
4. Sequences;
5. Feature labels.

Text qualifier values must be enclosed in double quotation marks. The
text can consist of any printable characters (ASCII values 32-126
decimal). If the text string includes double quotation marks, each set
must be `escaped' by placing a double quotation mark in front of it
(e.g., /note="This is an example of ""escaped"" quotation marks").

Some qualifiers require values selected from a limited set of choices.
For example, the `/direction' qualifier has only three values `left,'
`right,' or `both.' These are called controlled vocabulary qualifier
values. Controlled qualifier values are not case sensitive; they can
be entered in any combination of upper- and lowercase without changing
their meaning.

Citation or published reference numbers for the entry should be
enclosed in square brackets ([]) to distinguish them from other
numbers. Multiple citations are separated by commas (e.g.,
[1],[2],[3]).

A literal sequence of bases (e.g., "atgcatt") should be enclosed in
quotation marks. Literal sequences are distinguished from free text by
context. Qualifiers that take free text as their values do not take
literal sequences, and vice versa.

The `/label=' qualifier takes a feature label as its qualifier.
Although feature labels are optional, they allow unambiguous
references to the feature. The feature label identifies a feature
within an entry; when combined with the accession number and the name
of the data bank from which it came, it is a unique tag for that
feature. Feature labels must be unique within an entry, but can be the
same as a feature label in another entry. Feature labels are not case
sensitive; they can be entered in any combination of upper-and
lowercase without changing their meaning.

The following is a list of valid feature qualifiers.

/anticodon	Location of the anticodon of tRNA and the amino acid
                for which it codes
/bound_moiety	Moiety bound
/citation	Reference to a citation providing the claim of or
                evidence for a feature
/codon		Specifies a codon that is different from any found in the
                reference genetic code
/codon_start	Indicates the reading frame of a protein coding region
/cons_splice	Identifies intron splice sites that do not conform to
		the 5'-GT... AG-3' splice site consensus
/direction	Direction of DNA replication
/EC_number	Enzyme Commission number for the enzyme product of the
		sequence
/evidence	Value indicating the nature of supporting evidence
/frequency	Frequency of the occurrence of a feature
/function	Function attributed to a sequence
/gene		Symbol of the gene corresponding to a sequence region
/label		A label used to permanently identify a feature
/mod_base	Abbreviation for a modified nucleotide base
/note		Any comment or additional information
/number		A number indicating the order of genetic elements (e.g., exons
		or introns) in the 5' to 3' direction
/organism	Name of organism if different from that contained in
		the entry's ORGANISM field
/partial	Differentiates between complete regions and partial ones
/phenotype	Phenotype conferred by the feature
/product	Name of a product encoded by the sequence
/pseudo		Indicates that this feature is a non-functional version of the
		element named by the feature key
/rpt_family	Type of repeated sequence; `Alu' or `Kpn,' for example
/rpt_type	Organization of repeated sequence
/rpt_unit	Identity of repeat unit that constitutes a
		repeat_region
/standard_name	Accepted standard name for this feature
/transl_except	Translational exception: single codon, the translation
		of which does not conform to the reference genetic code
/type		Name of a strain if different from that in the SOURCE field
/usedin		Indicates that feature is used in a compound feature in
		another entry

3.5.11.4 Cross-Reference Information

One type of information in the feature table lists cross-references to
the annual compilation of transfer RNA sequences in Nucleic Acids
Research, which has kindly been sent to us on tape by Dr. Sprinzl.
Each tRNA entry of the feature table contains a /note= qualifier that
includes a reference such as `(NAR: 1234)' to identify code 1234 in
the NAR compilation. When such a cross-reference appears in an entry
that contains a gene coding for a transfer RNA molecule, it refers to
the code in the tRNA gene compilation. Similar cross-references in
entries containing mature transfer RNA sequences refer to the
companion compilation of tRNA sequences published by D.H. Gauss and M.
Sprinzl in Nucleic Acids Research. See section 3.5.11.6 for an
example.

The feature tables of human entries contain cross-references to the
Genome Data Base (GDB) in Baltimore, MD. GDB includes information on
mapped genes, probes, and restriction fragment length polymorphisms.
Each entry in that data bank contains the official symbol for the gene
or locus.  GDB assigns each gene a unique identifier that remains
associated with that gene, regardless of changes in gene names. In
entries that contain sequences for mapped genes a /note= qualifier
includes this identifier placed within single quotes following the
term `/hgml_locus_uid='. The /note qualifier also includes the map
location in single quotes following the term `/map'. The gene symbol
formerly designated `/nomgen=' is contained in the /gene qualifier.
See section 3.5.11.6 for an example.

For more information about the Genome Data Base, contact:

     	Genome Data Base
     	1830 East Monument Street
     	Baltimore, MD 21205
	Telephone: (203) 786-5515

3.5.11.5 Feature Table Examples

In the first example a number of key names, feature locations, and
qualifiers are illustrated, taken from different sequences. The first
table entry is a coding region consisting of a simple span of bases
and including a /gene qualifier. In the second table entry, an NAR
cross-reference is given (see the previous section for a discussion of
these cross-references). The third and fourth table entries use the
symbols `<`and `>' to indicate that the beginning or end of the
feature is beyond the range of the presented sequence. In the fifth
table entry, the symbol `^' indicates that the feature is between
bases. In the sixth table entry, the replace operator is shown.


1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

     CDS             5..1261
                     /note="alpha-1-antitrypsin precursor /map=`14q32.1'
                     /hgml_locus_uid=`LX0081X'"
                     /gene="PI"
     tRNA            1..87
                     /note="Leu-tRNA-CAA (NAR: 1057)"
                     /anticodon=(pos:35..37,aa:Leu)
     mRNA            1..>66
                     /note="alpha-1-acid glycoprotein mRNA"
     transposon      <1..267
                     /note="insertion element IS5"
     misc_recomb     105^106
                     /note="B.subtilis DNA end/IS5 DNA start"
     conflict        replace(258..258,"t")
                     /citation=[2]

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 10. Feature Table Entries

The next example shows the representation for a CDS that spans more
than one entry.

1        10        20        30        40        50        60        70      79

---------+---------+---------+---------+---------+---------+---------+---------

LOCUS HUMAPOB1 840 bp ds-DNA PRI 15-JUN-1989
DEFINITION Human apolipoprotein B-100 gene, exons 1 and 2.
ACCESSION M15053
KEYWORDS apolipoprotein B-100.
SEGMENT 1 of 2
  .
  .
  .
FEATURES Location/Qualifiers
     sig_peptide     283..354
                     /note="apolipoprotein B-100 signal peptide"
     precursor_RNA   155..>840
                     /note="apoB100 mRNA"
     intron          356..669
                     /note="apoB100 intron A"
     intron          709..>840
                     /note="apoB100 intron B"
  .
  .
  .
//
LOCUS HUMAPOB2 13872 bp ss-mRNA PRI 15-JUN-1989
DEFINITION Human apolipoprotein B-100 mRNA, starting at exon 3.
ACCESSION M15051 M15054
KEYWORDS apolipoprotein B-100.
SEGMENT 2 of 2
  .
  .
  .
FEATURES Location/Qualifiers
     precursor_RNA   <1..13872
                     /note="apoB100 mRNA"
     variation       3204
                     /note="g in lambda-B25; c in lambda B1"
     CDS             join(M15053:283..355,M15053:670..708,
                     1..13571)
                     /note="apolipoprotein B-100 precursor"
     mat_peptide     join(M15053:355..355,M15053:670..708,
                     1..13568)
                     /note="apolipoprotein B-100"
  .
  .
  .
//

---------+---------+---------+---------+---------+---------+---------+---------

1        10        20        30        40        50        60        70      79

Example 11. Joining Sequences


3.5.12 ORIGIN Format

The ORIGIN record may be left blank, may appear as `Unreported.' or
may give a local pointer to the sequence start, usually involving an
experimentally determined restriction cleavage site or the genetic
locus (if available). The ORIGIN record ends in a period if it
contains data, but does not include the period if the record is left
empty (in contrast to the KEYWORDS field which contains a period
rather than being left blank).

3.5.13 SEQUENCE Format

The nucleotide sequence for an entry is found in the records following
the ORIGIN record. The sequence is reported in the 5'to 3' direction.
There are sixty bases per record, listed in groups of ten bases
followed by a blank, starting at position 11 of each record. The
number of the first nucleotide in the record is given in columns 4 to
9 (right justified) of the record.

4.  FUTURE RELEASES

4.1 Changes Planned for Release 67.0

No changes are planned for Release 67.0.

5. KNOWN PROBLEMS WITH THE GENBANK DATABASE

5.1 Incorrect Gene Symbols in Entries and Index

The /gene qualifier should contain gene symbols. In this release,
however, the /gene qualifier for many entries incorrectly contains
values other than the gene symbol, such as the product or standard
name of the gene. The gene symbol index (GBHGM.IDX) is created from
the data in the /gene qualifier and therefore contains data other than
gene symbols. These errors will be corrected as soon as possible.

6. GENBANK ADMINISTRATION

IntelliGenetics Inc., a developer and distributor of molecular biology
computer programs and instrumentation, is the primary contractor for
the GenBank data bank. IntelliGenetics maintains the computerized data
center and oversees data distribution on all media. Under an
arrangement with IntelliGenetics, Los Alamos National Laboratory
(LANL) gathers, annotates, and organizes sequence data and transmits
it to IntelliGenetics. LANL is operated by the University of
California for the Department of Energy.

The electronic mail address of LANL is GENBANK@LANL.GOV; their
telephone number is (505) 665-2177. The IntelliGenetics address is on
the front page of these release notes.

6.1 Registered Trademark Notice

GenBank (R) is a registered trademark of the U.S. Department of Health
and Human Services for the Genetic Sequence Data Bank operated by
IntelliGenetics and Los Alamos National Laboratory under contract with
the National Institutes of Health.

6.2 GenBank Sponsorship

GenBank is sponsored by the National Institute of General Medical
Sciences, NIH; The National Library of Medicine, NIH; and the U.S.
Department of Energy.

6.3 Citing GenBank

If you have used GenBank in your research, we would appreciate it if
you would include a reference to GenBank in all publications related
to that research. You may also wish to note that the GenBank data bank
is publicly available from IntelliGenetics.

When citing data in GenBank, it is appropriate to give the sequence
name, primary accession number, and the publication in which the
sequence first appeared. If the data are unpublished, we urge you to
contact the group which submitted the data to GenBank to see if there
is a recent publication or if they have determined any revisions or
extensions of the data.

It is also appropriate to list a reference for GenBank itself. The
following publication, which describes the GenBank data bank, should
be cited:

Bilofsky, H.S. and Burks, C. The GenBank (R) Genetic Sequence Data Bank.
Nucl. Acids Res. 16: 1861-1864 (1988)

The following statement is an example of how you may cite GenBank
data. It cites the sequence, its primary accession number, the group
who determined the sequence, and GenBank. The numbers in brackets
refer to one of the GenBank citations above and the REFERENCE in the
GenBank sequence entry.

`We scanned the GenBank (1) data bank for sequence similarities and
found one sequence (2),

GenBank accession number J01016, which showed significant
similarity...'

(1) Bilofsky, H.S. and Burks, C. Nucl. Acids Res. 16: 1861-1864 (1988)
(2) Nellen, W. and Gallwitz, D. J. Mol. Biol. 159, 1-18 (1982)

6.4 GenBank Distribution Formats and Media

The GenBank data bank is available in three formats on three physical
media. The three formats are fixed-length 80-character records,
VAX/VMS Backup saveset, and compressed Unix tar archive format. The
three media are industry-standard 9-track magnetic tapes, Sun 1/4" QIC
24 format cartridges, and TK-50 cartridges. The following chart
specifies which formats are available in each medium.

To request a change in the format, media, or density of the tapes you
receive, write to the address (or call the telephone number) on the
first page of these release notes.

FILE FORMATS                          TAPE MEDIA

    			Unlabelled ASCII	VAX/VMS		Unix
			(fixed-length records)	Backup Saveset	tar tarfile

9-track, 2400' reel

     1600 bpi	 		MU		M		M

     6250 bpi	 		MU		M		M

TK-50 cartridge (DEC)		NA		M		NA

1/4" QIC 24 cartridge (Sun)	NA		NA 		M

 MU	tapes are available in both mixed-case and uppercase-only formats
 M	tapes are available only in mixed-case characters
 NA	not available

Table 1. Tape Media and Formats


6.5 Request for Direct Submission of Sequence Data

The growth of nucleotide sequence data is close to exponential. Both
the proposed Human Genome sequencing project and the increasing
automation of sequencing make it clear that GenBank is going to
continue to grow rapidly. A successful GenBank requires that the data
enter the data bank as soon as possible after publication, that the
annotations be as complete as possible, and that the sequence and
annotation data be accurate. All three of these requirements are best
met if authors of sequence data submit their data directly to GenBank
in a usable form. It is especially important that these submissions be
in computer-readable form.

GenBank must rely on direct author submission of data to ensure that
it achieves its goals of complete, accurate, and timely data. To
assist researchers in entering their own sequence data, GenBank has
developed AUTHORIN, an easy-to-use program that enables authors to
enter a sequence, annotate it, and submit it to GenBank or any of the
other data banks. The IBM PC compatible and Macintosh versions of
AUTHORIN may be obtained by completing the enclosed AUTHORIN request
card or by contacting GenBank at the address shown on the front of
these release notes. Versions for the VAX and Sun workstations are
also planned and will be announced in future release notes as they
become available.

For those who are unable to use the Authorin program, GenBank has a
printed data submission form. This form is now standardized among
EMBL, DDBJ, GenBank, PIR, MIPS, and JIPID. GenBank also provides a
corresponding computer-readable data submission form that can be used
for electronic mail and floppy disk submissions. The GenBank Data
Submission Form (located in the file GBDAT.FRM) can be used to submit
your sequence and annotations. Electronic mail submissions should go
to the address "GB-SUB%LIFE@LANL.GOV"; direct mail should go to our
postal address in Los Alamos, which is on the data submission form.

6.6 Request for Corrections and Comments

We welcome your suggestions for improvements to GenBank. We are
especially interested to learn of errors or inconsistencies in the
data. Please use the GenBank Error/Suggestion Report Form, which is
part of this distribution of GenBank (located in the file GBDAT.FRM),
to send your suggestions and corrections to the address on the first
page of these release notes. Please be certain to indicate the GenBank
release number (e.g., Release 66.0) and the primary accession number
of the entry to which your comments apply; it is helpful if you also
give the entry name and the current contents of any data field for
which you are recommending a change.

6.7 Disclaimer

IntelliGenetics Inc., Los Alamos National Laboratory, and the United
States Government make no representations or warranties regarding the
content or accuracy of the information. IntelliGenetics Inc., Los
Alamos National Laboratory, and the United States Government also make
no representations or warranties of merchantibility or fitness for a
particular purpose and accept no responsibility for any consequences
of the receipt or use of the information. 

APPENDIX A.  Statistical Summary

Division             Entries      Bases   Reports

PRIMATE                 7511     9003383     9493
RODENT                  7652     7841099     9176
OTHER MAMMALIAN         1552     1935603     1817
OTHER VERTEBRATE        1876     2142926     2263
INVERTEBRATE            3195     4005462     3811
PLANT                   2976     4659180     3636
ORGANELLE               1271     1848854     1569
BACTERIAL               4293     6992664     5528
STRUCTURAL RNA          1647      445723     1946
VIRAL                   3707     6439492     4751
PHAGE                    593      682556      880
SYNTHETIC               1028      516186     1129
UNANNOTATED             3756     4792964     4909
Total (13 divisions)   41057    51306092    50908


Sequences with greater than 30,000 bp

Locus          Div  Accession   Length

ADBCG          VRL   J01917     35937bp
CHKMYHE        VRT   J02714     31111bp
HS11UL         VRL   D00317    108360bp
HS4            VRL   V01555    172282bp
HS5HCMVU       VRL   X04650     43275bp
HUMADAG        PRI   M13792     36741bp
HUMFIXG        PRI   K02402     38059bp
HUMGHCSA       PRI   J03071     66495bp
HUMHBB         PRI   J00179     73326bp
HUMHPRTB       PRI   M26434     56736bp
HUMTPA         PRI   K03021     36594bp
LAMCG          PHG   J02459     48502bp
MPOCPCG        ORG   X04465    121024bp
MUSBGCXD       ROD   X14061     55856bp
PT7CG          PHG   J02518     39936bp
RABBGLOB       MAM   M18818     44594bp
RATCRYG        ROD   M19359     54670bp
TOBCPCG        ORG   Z00044    155844bp
VACCG          VRL   M35027    191737bp
VAZCG          VRL   X04370    124884bp
X14112         UNA   X14112    152260bp
X14720         UNA   X14720     35100bp
X15423         UNA   X15423     47081bp
X15917         UNA   X15917     40469bp
X17012         UNA   X17012     30000bp
X17403         UNA   X17403    229354bp


APPENDIX B.  Entries with a change in locus name

 Accession  Rel 65.0     Rel 66.0
 --------   ---------    ---------
 J03132     HUMICAM1     HUMICAM1M 
 J04134     MUSCNR       MUSCNRA   
 K00319     BEACPTRMF    PHVCPTRMF 
 K00336     BEACPTRF     PHVCPTRF  
 M22244     BOVSVSP      BOVSVSPA  
 M24637     CHKCEK       CHKCEK1   
 M29035     BSUPEPF      BSUPEPFA  
 M29579     RATGLUSA     RATGLUS   
 M30953     ECOPANA      ECOPANF   
 M31077     HUMSTATHG1   HUMSTATH1 
 M31612     TRBESAGC     TRBESAGCA 
 M31628     STMHISOP     STMHISOPA 
 M32331     HUMICAM1AA   HUMICAM1  
 M32639     HUMSTATHG2   HUMSTATH2 
 M36473     ACLP322P     ACCP322P  
 X02297     PARSP51A3    PARSP51A4 
 X03499     DDITRNV      DDITGNV   
 X03500     DDITRNE      DDITGNE   
 X04083     TVMXGG       TVMXCG    
 X12646     HUMRPHO2A    HUMAPP2A  
 X12656     HUMPP2A      HUMBPP2A  
 X17615     ECOFHUE      X17615    
 Y00448     ECOK2KORB    RK2KORB   


APPENDIX C. Number of entries, reports, and bases by organism

PRIMATE

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. AGM        Cercopithecus aethiops                      61      42    31391
  2. ATR        Aotus trivirgatus                            7       7     7557
  3. BAB        Papio anubis                                 3       3     2653
  4. BAB        Papio doguera                                1       1     2000
  5. BAB        Papio hamadryas                              7       7    11052
  6. BAB        Papio papio                                  1       1      343
  7. BAB        Papio sp.                                    3       3     1601
  8. CEB        Cebus sp.                                    2       2      190
  9. CEP        Cebus apella                                 7       7     1819
 10. CHP        Pan paniscus                                 1       1     1683
 11. CHP        Pan troglodytes                             68      53    72174
 12. COL        Colobus polykomos                            2       2     1494
 13. GCR        Galago crassicaudatus                       38      38    16345
 14. GIB        Hylobates lar                                8       6    17024
 15. GOR        Gorilla gorilla                             19      11    19990
 16. GSE        Galago senegalensis                          1       1      369
 17. HUM        Homo sapiens                              9156    7235  8687688
 18. LEM        Cheirogaleus medius                          1       1     1899
 19. LEM        Lemur albifrons                              1       1     1786
 20. LEM        Lemur macaco                                 3       3     5590
 21. LEM        Lemur sp.                                    1       1     1380
 22. MAC        Macaca fascicularis                          8       7     6355
 23. MAC        Macaca mulatta                              40      28    33283
 24. MAC        Macaca nemestrina                            1       1     1115
 25. MAC        Macaca radiata                               2       2      342
 26. MAC        Macaca sp.                                   7       6     7502
 27. MNK        Ateles geoffroyi                             4       4    13966
 28. MNK        Monkey                                      11      11     2081
 29. ORA        Pongo pygmaeus                              19      17    36667
 30. SOE        Saguinus oedipus                             4       4     5207
 31. TAR        Tarsius sp.                                  6       5    10837

     Total                                                9493    7511  9003383

RODENT

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. DIP        Dipodomys ordii                              1       1     3318
  2. GPI        Cavia cobaya                                 1       1      491
  3. GPI        Cavia cutleri                                3       2     4959
  4. GPI        Cavia porcellus                             23      22    36118
  5. GPI        Cavia sp.                                    2       2     3226
  6. HAM        Cricetulus griseus                          32      28    38686
  7. HAM        Cricetulus longicaudatus                    44      31    20752
  8. HAM        Cricetulus sp.                              37      33    31583
  9. HAM        Cricetus cricetus                            6       6    11446
 10. HAM        Mesocricetus auratus                        81      58    77935
 11. HAM        Mesocricetus sp.                            94      62    47934
 12. MAR        Marmota monax                                8       6     8563
 13. MUS        Mus caroli                                  18      17    13904
 14. MUS        Mus domesticus                              24      20    12906
 15. MUS        Mus muscaris                                56      56    28343
 16. MUS        Mus musculus                              5821    4884  4299073
 17. MUS        Mus pahari                                   7       7     7763
 18. MUS        Mus platythrix                               1       1      315
 19. MUS        Mus sp.                                     11      11     9130
 20. MUS        Mus spretus                                  9       7     7454
 21. PER        Peromyscus leucopus                          3       3     3640
 22. PER        Peromyscus maniculatus                      11      11     1791
 23. RAT        Rattus colletti                              4       4     7849
 24. RAT        Rattus fuscipes                              1       1     1161
 25. RAT        Rattus leucopus                              3       3     3481
 26. RAT        Rattus norvegicus                         2599    2144  2797456
 27. RAT        Rattus rattus                              209     177   284465
 28. RAT        Rattus sordidus                              1       1     1161
 29. RAT        Rattus sp.                                  56      45    61254
 30. RAT        Rattus tunneyi                               1       1     1161
 31. RAT        Rattus villosissimus                         2       2     3369
 32. SEH        Spalax ehrenbergi                            7       5    10412

     Total                                                9176    7652  7841099

OTHER MAMMALIAN

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. AXI        Axis axis                                    2       2     1758
  2. BOV        Bos bovis                                    1       1     2363
  3. BOV        Bos taurus                                 755     642   741804
  4. CAT        Felis catus                                 40      40    23293
  5. CAT        Felis domesticus                             3       3     4748
  6. CAT        Felis silvestris                             8       6     9516
  7. CAT        Felis sp.                                    1       1     3534
  8. DAV        Dasyurus viverrinus                          2       2      939
  9. DOG        Canis familiaris                            55      45    52602
 10. DOG        Canis lupus                                  8       8     7867
 11. DOG        Canis sp.                                   19      18    22470
 12. GOT        Capra hircus                                46      41    42286
 13. HRS        Equus caballus                              66      38    32167
 14. LEE        Lepus capensis                               1       1      434
 15. LEE        Lepus europaeus                              1       1     3646
 16. MMU        Muntiacus muntjak                            1       1      807
 17. MVI        Mustela vison                                3       3     1909
 18. OPO        Didelphis virginiana                         9       9     7139
 19. ORC        Orcinus orca                                 1       1     1579
 20. PIG        Sus scrofa                                 190     155   242401
 21. RAB        Basilea sp.                                  1       1      377
 22. RAB        Oryctolagus cuniculus                      420     363   525433
 23. RAB        Oryctolagus sp.                             57      57    70289
 24. RAB        Sylvilagus floridanus                        1       1     1065
 25. SEA        Halichoerus grypus                           3       3     2288
 26. SHP        Ovis aries                                  69      61    87157
 27. SHP        Ovis sp.                                    41      38    35507
 28. SUN        Suncus murinus                               8       6     6231
 29. VMP        Desmodus rotundus                            2       1     1725
 30. WAL        Macropus eugenii                             1       1      754
 31. WAL        Macropus robustus                            1       1     1465
 32. WAL        Macropus rufus                               1       1       50

     Total                                                1817    1552  1935603

OTHER VERTEBRATE

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. ANG        Anguilla australis                           1       1     2191
  2. APT        Ascaphus truei                               2       1     1897
  3. BUJ        Bufo japonicus                               2       2     1116
  4. CHK        Gallus domesticus                          158     120   174064
  5. CHK        Gallus gallus                             1040     851  1029779
  6. CPL        Carcharhinus plumbeus                        4       4     1821
  7. CRC        Caiman crocodylus                            5       5     2902
  8. DUK        Aix sp.                                      1       1      165
  9. DUK        Anas platyrhynchos                          15      14    21280
 10. DUK        Cairina moschata                            30      22    25269
 11. FAL        Falco columbarius                            1       1      174
 12. FSA        Myxine glutinosa                             1       1      915
 13. FSA        Petromyzon marinus                           5       5     9661
 14. FSB        Acipenser transmontano                       2       1     1140
 15. FSB        Anarhichas lupus                             1       1     3395
 16. FSB        Carassius auratus                           12      11     9222
 17. FSB        Catostomus commersoni                        4       3     1936
 18. FSB        Ctenopharyngobon idella                      1       1     4243
 19. FSB        Cyprinus carpio                             18      17    16913
 20. FSB        Electrophorus electricus                     5       5     8692
 21. FSB        Elops saurus                                 9       5     3870
 22. FSB        Fundulus heteroclitus                        1       1     1673
 23. FSB        Ictalurus punctatus                          7       6     5679
 24. FSB        Limanda ferruginea                           1       1      416
 25. FSB        Lophius americanus                           8       5     2942
 26. FSB        Macrozoarces americanus                      3       3     2657
 27. FSB        Misgurnus fossilis                           2       2     1697
 28. FSB        Oncorhynchus keta                           30      26    23515
 29. FSB        Oncorhynchus kisutch                         2       2     3221
 30. FSB        Oncorhynchus tschawytscha                    3       3     1862
 31. FSB        Paralichthys olivaceus                       7       5     4859
 32. FSB        Pseudopleuronectus americanus                8       6     3002
 33. FSB        Salmo gairdneri                             52      48    40813
 34. FSB        Salmo irideus                                1       1     1278
 35. FSB        Salmo salar                                  8       6     6764
 36. FSB        Thunnus thynnus                              1       1      911
 37. FSC        Torpedo californica                         21      13    23035
 38. FSC        Torpedo marmorata                            7       7     9992
 39. GOO        Anser anser                                  2       2     4906
 40. GRE        Geoclemys reevessi                           1       1      239
 41. HEF        Heterodontus francisci                      34      29    19173
 42. KRY        Kryptophaneron alfredi                       1       1     1230
 43. LSE        Laticauda semifasciata                       1       1      483
 44. LSL        Laticauda laticaudata                        2       1      632
 45. MRG        Mergus serrator                              1       1     2574
 46. NEW        Cynops pyrrhogaster                          1       1      629
 47. NVI        Notophthalmus viridescens                   10      10     1458
 48. ORN        Oreochromis mossambicus                      2       1      237
 49. ORN        Oreochromis niloticus                        1       1      847
 50. PAG        Pagrus major                                 2       1      906
 51. PGN        Columba sp.                                  2       2     1665
 52. PHS        Phasianus colchicus                          1       1      739
 53. PHU        Phyllomedusa bicolor                         1       1      781
 54. PHU        Phyllomedusa sauvagei                        2       2     1315
 55. PLS        Phylloscopus trochilus                       6       3     2593
 56. PYU        Pyura stolonifera                            7       7     1029
 57. QUL        Coturnix coturnix                           50      35    36670
 58. QUL        Coturnix japonica                            1       1      311
 59. RAN        Rana catesbeiana                            10       8     6949
 60. RAN        Rana pipiens                                 4       3     1625
 61. RAN        Rana temporaria                             19      14     7422
 62. SCC        Scyliorhinus caniculus                       2       2      667
 63. SEQ        Seriola quinqueradiata                       1       1      879
 64. SKT        Raja erinacea                                8       8    10209
 65. SMD        Triturus vulgaris                            4       4      901
 66. SMR        Pleurodeles waltlii                          5       4     2305
 67. SNK        Aipysurus laevis                             6       3     1332
 68. SNK        Bothrops atrox                               8       7    11423
 69. SNK        Crotalus durissus                            3       2     1263
 70. SNK        Elaphe radiata                               1       1     2483
 71. SNK        Naja naja                                    1       1      312
 72. SNK        Natrix tessellata                            1       1      312
 73. SNK        Notechis scutatus                            2       1      621
 74. SRA        Hemitripterus americanus                     2       2     3294
 75. TKY        Meleagris gallopavo                         16      14     6836
 76. VIA        Vipera ammodytes                             2       1      607
 77. XEB        Xenopus borealis                            27      26    19249
 78. XEC        Xenopus clivii                               6       6     1406
 79. XEL        Xenopus laevis                             503     440   505221
 80. XET        Xenopus tropicalis                          11       8    14850
 81. XIP        Xiphophorus maculatus                        4       2      983
 82. XIP        Xiphophorus sp.                              2       1     4135
 83. ZEF        Brachydanio rerio                            8       6     4264

     Total                                                2263    1876  2142926

INVERTEBRATE

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. ACA        Acanthamoeba castellanii                    32      28    28156
  2. ACP        Acropora formosa                             2       2      236
  3. ACP        Acropora latistella                          3       3      354
  4. ADO        Acheta domesticus                            1       1      541
  5. AEI        Aequipecten irradians                        2       2     1253
  6. AEV        Aequorea victoria                            4       4     2595
  7. AME        Apis melifica                                2       2      897
  8. AMF        Apis mellifera                               8       8     2082
  9. APL        Aplysia californica                         35      32    28418
 10. APL        Aplysia sp.                                  9       9     9086
 11. APO        Antheraea polyphemus                        33      33    16883
 12. APY        Antheraea yamamai                            1       1     1200
 13. ARB        Arbacia punctulata                           3       2     5078
 14. BBO        Babesia bovis                                4       4     2482
 15. BBO        Babesia rodhaini                             1       1     3238
 16. BMO        Bombyx mandarina                             3       3     2712
 17. BMO        Bombyx mori                                152     120    87988
 18. BPL        Brachionus plicatilis                        1       1      120
 19. BRP        Brugia malayi                                9       8     8730
 20. BRP        Brugia pahangi                               2       2     4893
 21. BUG        Bugula neritina                              1       1      120
 22. CAF        Calanus finmarchicus                         1       1     1487
 23. CAR        Carcinoscorpius rotundicauda                 1       1      983
 24. CAV        Calliphora vicina                           11       7    16088
 25. CBL        Trichoplusia ni                              1       1     2475
 26. CCA        Caledia captiva                             12      12    11713
 27. CEI        Ceratitis capitata                           1       1     1115
 28. CEL        Caenorhabditis briggsae                      7       4     5300
 29. CEL        Caenorhabditis elegans                     139     108   228239
 30. CER        Calliphora erythrocephala                    6       6     1677
 31. CHI        Chironomus pallidivittatus                  21      16     5529
 32. CHI        Chironomus tentans                          22      20    20059
 33. CHI        Chironomus thummi                           32      30    32150
 34. CLM        Clam sp.                                     1       1     2163
 35. CLM        Spisula solidissima                          2       2     3577
 36. CPD        Colpidium campylum                           1       1       76
 37. CPD        Colpidium colpoda                            1       1       76
 38. CRB        Cardisoma guanhumi                           3       3     1992
 39. CRB        Gecarcinus lateralis                         4       4     6714
 40. CRB        Geryon quinquedens                           1       1       85
 41. CRB        Limulus polyphemus                           4       4     4886
 42. CRB        Paguras pollicaris                           4       4      419
 43. CUL        Culex pipiens                                1       1     3105
 44. DDI        Dictyostelium discoideum                   282     215   215990
 45. DDI        Dictyostelium sp.                            2       1     4439
 46. DEM        Dermasterias imbricata                       2       2     1016
 47. DEP        Dermatophagoides pteronyssinus               2       1      824
 48. DIA        Diadromus pulchellus                         1       1      324
 49. DIC        Dicyema misakiense                           1       1      116
 50. DIR        Dirofilaria immitis                          2       2     2791
 51. DRE        Drosophila erecta                            4       4     4847
 52. DRF        Drosophila funebris                          2       1     3002
 53. DRG        Drosophila gymnobasis                       10      10     1793
 54. DRH        Drosophila heteroneura                       1       1      922
 55. DRH        Drosophila hydei                            18      15    26936
 56. DRH        Drosophila irilis                            1       1     1602
 57. DRI        Drosophila grimshawi                         3       3     3860
 58. DRL        Drosophila silvarentis                       2       2      356
 59. DRM        Drosophila mauritiana                        6       4     8528
 60. DRN        Drosophila navojoa                           2       1     2334
 61. DRN        Drosophila nebulosa                          2       2     2991
 62. DRO        Drosophila melanogaster                   1242    1001  1581360
 63. DRO        Drosophila subobscura                        2       2     4827
 64. DRP        Drosophila pseudoobscura                    14       7    38083
 65. DRQ        Drosophila sechellia                         3       2     5559
 66. DRR        Drosophila orena                             7       4     7293
 67. DRS        Drosophila simulans                         23      18    21926
 68. DRS        Drosophila sp.                               2       2     5761
 69. DRT        Drosophila teissieri                         4       4     7787
 70. DRU        Drosophila mulleri                           1       1     6778
 71. DRV        Drosophila virilis                          47      37    72725
 72. DRW        Drosophila mojavensis                        6       5    21612
 73. DRY        Drosophila yakuba                            1       1     1853
 74. ECC        Echinococcus granulosus                      2       2      846
 75. EIM        Eimeria acervulina                           4       2     1764
 76. EIM        Eimeria tenella                              5       4     4629
 77. ENH        Entamoeba histolytica                       15      14    10247
 78. EPH        Ephydatia mulleri                            1       1     2895
 79. EUC        Eurypelma californicum                       1       1     1579
 80. EWA        Euplotes aediculatus                         1       1     1882
 81. EWC        Euplotes crassus                             2       2     1427
 82. EWE        Euplotes eurystomus                          2       1      930
 83. EWR        Euplotes raikovi                             1       1      593
 84. FFL        Luciola cruciata                             1       1     1985
 85. FHE        Fasciola hepatica                            1       1      894
 86. GCH        Glaucoma chattoni                            3       3      564
 87. GLA        Giardia lamblia                             14      10     9487
 88. GLA        Giardia sp.                                  1       1      831
 89. GLY        Glycera dibranchiata                         1       1      745
 90. GMO        Glossina austeni                             1       1      653
 91. GMO        Glossina fuscipes                            1       1      239
 92. GMO        Glossina morsitans                           7       7     3244
 93. GMO        Glossina palpalis                            1       1      236
 94. HAE        Haemonchus contortus                         4       4     3557
 95. HCE        Hyalophora cecropia                         11      11     6608
 96. HEL        Heliothis virescens                          1       1     2977
 97. HIR        Hirudo medicinalis                           1       1      379
 98. HLT        Haliotis corrugata                           1       1      650
 99. HLT        Haliotis rufescens                           1       1      642
100. HOL        Holothuria polii                             5       5     1964
101. HOL        Holothuria tubulosa                          1       1      441
102. HYD        Hydra sp.                                    2       2     4555
103. LAN        Lingula anatina                              1       1      120
104. LAR        Lampetra reissneri                           1       1      120
105. LEI        Leishmania donovani                         10       6    10013
106. LEI        Leishmania enriettae                         4       4     1562
107. LEI        Leishmania enriettii                         4       4     4213
108. LEI        Leishmania major                            10       8     9788
109. LEI        Leishmania sp.                               4       4     8884
110. LEI        Leishmania tropica                           1       1     1851
111. LIT        Litomosoides carinii                         2       2      214
112. LMI        Locusta migratoria                           5       5     3039
113. LOA        Loa loa                                      1       1      839
114. LUM        Lumbricus terrestris                         2       2     5061
115. LYM        Lymnaea stagnalis                            2       2     1764
116. MDO        Musca domestica                              3       2     2916
117. MOT        Manduca sexta                               25      22    40693
118. MSQ        Aedes aegypti                                4       4     8350
119. MSQ        Anopheles gambiae                           21      21     7322
120. NEM        Ascaris lumbricoides                        35      34    17038
121. NEM        Ascaris suum                                 2       2     6079
122. NEP        Nephila clavipes                             1       1     2336
123. NGR        Naegleria gruberi                            4       4     6389
124. OCT        Octopus dofleini                             1       1     1315
125. OCT        Paroctopus defleini                          1       1     1675
126. OFA        Oxytricha fallax                            34      13     9421
127. OMM        Ommastrephes sloanei                         2       2     1825
128. ONG        Onchocerca sp.                               2       2      214
129. ONG        Onchocerca volvulus                         25      24    15477
130. ONO        Oxytricha nova                              21      21    20172
131. OWE        Owenia fusiformis                            1       1     1548
132. PAA        Parascaris sp.                               2       2      215
133. PAL        Paracentrotus lividus                       11       9    13481
134. PAR        Paramecium aurelia                           5       5     1190
135. PAR        Paramecium primaurelia                       8       8    12822
136. PAR        Paramecium tetraurelia                      20      17     9174
137. PBA        Plasmodium gallinaceum                       1       1      799
138. PBE        Plasmodium berghei                           9       9    11176
139. PBS        Plasmodium brasilianum                       2       2     3010
140. PCH        Plasmodium chabaudi                         11       9    17151
141. PCR        Philosamia cynthia ricini                    2       2      240
142. PCY        Plasmodium cynomolgi                         6       6     7875
143. PFA        Plasmodium falciparum                      168     138   216729
144. PFA        Plasmodium fragile                           2       1     2307
145. PIO        Pisaster ochraceus                           5       5     9699
146. PKN        Plasmodium knowlesi                         11       9     8880
147. PLM        Plasmodium malariae                          1       1     1545
148. PLM        Plasmodium reichenowi                        1       1      654
149. PLO        Plasmodium lophurae                          6       5     6087
150. PMC        Pneumocystis carinii                        10       6     5670
151. PMI        Prorocentrum micans                          2       1     2451
152. PNG        Panagrellus redivivus                        2       2      322
153. PNG        Panagrellus silusiae                         1       1      682
154. PPY        Photinus pyralis                             1       1     2387
155. PVI        Plasmodium vivax                            13       7     8966
156. PYO        Plasmodium yoelii                           15      11    21793
157. SAR        Sarcocystis gigantea                         3       3      473
158. SCA        Schistocerca americana                       3       3     3458
159. SCA        Schistocerca nitans                          2       2      711
160. SCI        Sciara coprophila                            2       2      822
161. SCM        Schistosoma japonicum                       10       9     9090
162. SCM        Schistosoma mansoni                         58      52    46518
163. SCR        Androctonus australis                        7       7     2563
164. SEM        Parastichopus parvimensis                    1       1     1458
165. SHR        Artemia salina                              21      20    14517
166. SHR        Artemia sp.                                 11       8     6407
167. SLE        Stylonychia lemnae                           4       4     7237
168. SLU        Stylonychia pustulata                        5       5     2820
169. SPE        Sarcophaga peregrina                         7       7     6405
170. SPF        Spodoptera frugiperda                        5       5     7382
171. SQD        Loligo pealii                                1       1     3693
172. STF        Asterina pectinifera                         1       1     2180
173. SUH        Hemicentrotus pulcherrimus                   1       1     2413
174. SUL        Lytechinus pictus                           14      13    10476
175. SUL        Lytechinus variegatus                       16      16    12102
176. SUP        Psammechinus miliaris                       50      38    25964
177. SUS        Strongylocentrotus drobachiensis             4       4     1256
178. SUS        Strongylocentrotus franciscanus              2       2     3832
179. SUS        Strongylocentrotus purpuratus              167     158   114993
180. SUT        Tripneustes gratilla                        13       7    10207
181. SUU        Sea urchin                                  12      12     2632
182. TAE        Taenia solium                                3       2     3737
183. TAT        Tachypleus tridentatus                       1       1      946
184. TCA        Tribolium castaneum                          1       1      707
185. TCK        Boophilus microplus                          2       1     2225
186. TCS        Trichostrongylus colubriformis               2       2     1987
187. TEC        Tetrahymena cosmopolitanis                   1       1      511
188. TEH        Tetrahymena hyperangularis                   2       2      767
189. TEL        Tetrahymena leucophrys                       1       1       75
190. TEM        Tetrahymena malaccensis                      1       1      507
191. TEN        Tenebrio molitor                            23      23     5207
192. TEP        Tetrahymena paravorax                        1       1       74
193. TEP        Tetrahymena pigmentosa                       4       4     3072
194. TES        Tetrahymena sonneborni                       1       1      511
195. TET        Tetrahymena thermophila                     64      61    49075
196. TEU        Tetrahymena patula                           1       1       75
197. TEX        Tetrahymena vorax                            1       1       75
198. TEY        Tetrahymena pyriformis                      13      11    10560
199. THE        Theileria annulata                           2       2     2859
200. THE        Theileria parva                              3       3     6729
201. TOX        Toxoplasma gondii                           10      10    12582
202. TRB        Trypanosoma brucei                         252     223   288704
203. TRC        Trypanosoma cruzi                           35      33    31153
204. TRE        Trypanosoma equiperdum                       6       4     3816
205. TRF        Crithidia fasciculata                       16      12    20239
206. TRI        Trichomonas vaginalis                        1       1      582
207. TRL        Leptomonas collosoma                         1       1      154
208. TRL        Leptomonas seymouri                          6       4     2130
209. TRO        Trypanosoma congolense                       9       9     8879
210. TRV        Trypanosoma vivax                            2       2      857
211. TRY        Trypanosoma rangeli                          1       1      153
212. TSR        Trichinella spiralis                         3       2     2138
213. UCA        Urechis caupo                                1       1      718
214. VAH        Vargula hilgendorfii                         1       1     1818
215. VAI        Vairimorpha necatrix                         1       1     1244
216. VUI        Eupelmus vuilleti                            1       1      106
217. WSP        Dolichovespula maculata                      2       2     1367
218. WUC        Wuchereria bancrofti                         1       1     1323

     Total                                                3811    3195  4005462

PLANT

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. ABG        Absidia glauca                               2       1     1011
  2. ACK        Achlya ambisexualis                          1       1     1121
  3. ACK        Achlya bisexualis                            1       1     1809
  4. ACK        Achlya klebsiana                             1       1     1254
  5. ACT        Actinidia chinensis                          8       5     5231
  6. ACT        Actinidia deliciosa                          1       1      634
  7. AEG        Aegilops tauschii                            1       1      421
  8. ALC        Allium cepa                                  3       3     1135
  9. ALF        Medicago sativa                             29      18    26748
 10. AMA        Antirrhinum majus                           11       7    11860
 11. APE        Acremonium chrysogenum                       2       2     2410
 12. ASA        Aspergillus awamori                          4       3     7873
 13. ASG        Aspergillus niger                           12       9    18564
 14. ASL        Aessosporon salmonicolor                     1       1      119
 15. ASN        Aspergillus nidulans                        49      42    89815
 16. ASO        Aspergillus oryzae                          13      10    14743
 17. AST        Avena sativa                                 8       8    22641
 18. ATH        Arabidopsis thaliana                        94      76   136042
 19. AVO        Persea americana                             3       3     4672
 20. BJE        Bjerkandera adusta                           1       1      118
 21. BLY        Hordeum vulgare                             91      72    86901
 22. BNA        Brassica napus                              25      21    23597
 23. BOL        Brassica campestris                          8       5     5320
 24. BOL        Brassica juncea                              3       2      356
 25. BOL        Brassica oleracea                           12       9     3859
 26. BRM        Bremia lactucae                              1       1     2869
 27. BRN        Bertholletia excelsa                         1       1      621
 28. CAG        Canavalia gladiata                           3       2     4797
 29. CCI        Coprinus cinereus                            2       2     6091
 30. CEN        Canavalia ensiformis                         1       1     1027
 31. CFU        Caldariomyces fumago                         2       1     2787
 32. CHE        Chenopodium rubrum                           6       3     1865
 33. CHL        Chlorella protothecoides                     2       1     1332
 34. CHL        Chlorella sp.                                6       6     1019
 35. CIP        Mesembryanthemum crystallinum               11       8    25401
 36. CLC        Claviceps purpurea                           2       2      758
 37. CLI        Citrus limon                                 3       3     4958
 38. CLR        Clarkia unguiculata                          2       1     2040
 39. CNA        Citrullus vulgaris                           1       1     1334
 40. COA        Convolvulus arvensis                         4       4     4549
 41. COC        Cochliobolus heterostrophus                  2       2     2634
 42. COG        Colletotrichum capsici                       1       1     2557
 43. COG        Colletotrichum gloeosporioides               1       1     1749
 44. COG        Colletotrichum graminicola                   2       2     5286
 45. COT        Gossypium hirsutum                           9       9    13403
 46. CPA        Carica papaya                                3       3     2037
 47. CPA        Cyanophora paradoxa                          1       1      528
 48. CRE        Chlamydomonas reinhardtii                   49      38    52939
 49. CTR        Catharanthus roseus                          1       1     1740
 50. CUC        Cucurbita maxima                             5       3    15360
 51. CUC        Cucurbita moschata                           2       1     1781
 52. CUC        Cucurbita pepo                               8       8     7363
 53. CUS        Cucumis melo                                 1       1     1137
 54. CUS        Cucumis sativus                             13      12    12742
 55. DAR        Daucus carota                               11       9    11820
 56. DBI        Dolichos biflorus                            3       3     5384
 57. DUN        Dunaliella salina                            3       2     2541
 58. EGR        Euglena gracilis                             9       6     9011
 59. EPA        Endothia parasitica                          5       3     3809
 60. EPK        Ephedra kokanica                             2       1      120
 61. ERG        Erysiphe graminis                            1       1     2475
 62. FIL        Filobasidium capsuligenum                    1       1      118
 63. FIL        Filobasidium floriforme                      1       1      118
 64. FLX        Linum usitatissimum                          5       5     1726
 65. FSO        Fusarium oxysporum                           2       2     1347
 66. FSO        Fusarium solani                              3       3     5508
 67. FSO        Fusarium sporotrichioides                    2       1     1908
 68. FTR        Flaveria trinervia                           1       1      752
 69. GCO        Gracilaria tikvahiae                         1       1     1771
 70. GCO        Gracilaria verrucosa                         1       1     1771
 71. GNG        Gnetum gnemon                                2       1      120
 72. GRO        Gracilariopsis sp.                           1       1     1782
 73. HAS        Hansenula anomala                            2       1     2132
 74. HAS        Hansenula polymorpha                         2       1     3637
 75. HEV        Hevea brasiliensis                           1       1     1008
 76. HNN        Helianthus annuus                            6       4     5752
 77. HRA        Armoracia rusticana                          2       2     5828
 78. IPB        Ipomoea batatas                              9       7    11859
 79. LGI        Lemna gibba                                  6       6     5024
 80. LGI        Lemna minor                                  1       1      119
 81. LIL        Lilium henryi                                1       1     9345
 82. LOL        Lolium perenne                               2       2     2082
 83. LUP        Lupinus luteus                              20      15     5280
 84. MAQ        Marsilia quadrifolia                         2       1      155
 85. MIN        Matthiola incana                             1       1      509
 86. MRA        Mucor racemosus                              8       7     6601
 87. MRM        Mucor circinelloides                         1       1     4399
 88. MRM        Mucor miehei                                 2       2     3316
 89. MRP        Mucor pusillus                               1       1     1965
 90. MZE        Zea mays                                   235     193   295885
 91. MZE        Zea mexicana                                 2       2      360
 92. NAN        Nanochlorum eucaryotum                       2       1     1796
 93. NEU        Neurospora crassa                          116     102   168075
 94. OCH        Ochromonas danica                            1       1     1789
 95. PAN        Podospora anserina                           3       3     1901
 96. PAP        Papaver somniferum                           2       2      864
 97. PBL        Phycomyces blakesleeanus                     3       3      545
 98. PCP        Physcomitrella patens                        1       1     2544
 99. PEA        Pisum sativum                               81      72    85166
100. PEC        Penicillium chrysogenum                      7       6    20758
101. PEP        Penicillium patulum                          1       1     6357
102. PET        Petunia hybrida                             37      31    28787
103. PET        Petunia sp.                                 25      24    13154
104. PHA        Phanerochaete chrysosporium                 14      10    18832
105. PHN        Pharbitis nil                               10       5      534
106. PHO        Petroselinum hortense                        1       1     1431
107. PHT        Phytophthora megasperma                      4       2     3031
108. PHV        Phaseolus lunatus                            1       1      926
109. PHV        Phaseolus vulgaris                          48      37    43358
110. PIN        Pinus contorta                               1       1      745
111. PIN        Pinus sylvestris                             2       1      583
112. PIN        Pinus thunbergii                             4       2     1889
113. PMI        Prorocentrum micans                          2       1     3408
114. POA        Polytomella agilis                           3       3     6616
115. POM        Polystichum munitum                          4       4     4645
116. POP        Populus sp.                                 17      10     3776
117. POT        Solanum tuberosum                           59      52    81544
118. PSJ        Psathyrostachys juncea                       2       2     2035
119. PTE        Porphyra umbilicalis                         2       1      121
120. PUM        Petroselinum crispum                        10      10     6270
121. PYL        Pylaiella littoralis                         2       1     1644
122. RAD        Raphanus sativus                             9       6     2470
123. RCC        Ricinus communis                             6       6    10485
124. RCH        Rhizopus chinensis                           1       1     1133
125. RCH        Rhizopus niveus                              2       2     3448
126. RCH        Rhizopus oryzae                              1       1     2290
127. RDT        Rhodotorula rubra                            2       1     3586
128. RHD        Rhodosporidium toruloides                    2       2     3181
129. RHP        Parasponia andersonii                        1       1     1520
130. RHP        Parasponia rhizobium                         2       2     5530
131. RIC        Oryza sativa                                81      56    78071
132. RYE        Secale cereale                               3       3     5870
133. SAL        Sinapis alba                                12       8     8316
134. SCN        Schwanniomyces occidentalis                  2       1     2292
135. SCO        Schizophyllum commune                        5       5     4836
136. SES        Sesbania rostrata                            6       5     3948
137. SIP        Silene pratensis                             4       4     3165
138. SLM        Physarum polycephalum                       59      49    52689
139. SOY        Glycine max                                144     111   165611
140. SPI        Spinacia oleracea                           37      30    34346
141. SRG        Sorghum bicolor                              9       5     6336
142. SRG        Sorghum sp.                                  2       1     4638
143. SSI        Scilla siberica                              4       4      204
144. SSY        Sisymbrium irio                              2       1      433
145. TDA        Thaumatococcus daniellii                     1       1      931
146. TFR        Trifolium repens                             2       1     1268
147. THI        Thinopyrum elongatum                         1       1     1375
148. TLA        Thermomyces lanuginosus                      6       5     3804
149. TOB        Nicotiana alata                              1       1      804
150. TOB        Nicotiana plumbaginifolia                   12      11    22286
151. TOB        Nicotiana rustica                            2       2      593
152. TOB        Nicotiana sylvestris                         4       4     1382
153. TOB        Nicotiana tabacum                           67      51    71765
154. TOM        Lycopersicon esculentum                     91      72    94920
155. TOM        Lycopersicon peruvianum                      1       1      480
156. TRD        Tripsacum dactyloides                        6       6     1528
157. TRH        Trichosanthes kirilowii                      2       2     2237
158. TRR        Trichoderma reesei                           4       4     8343
159. TRT        Trema tomentosa                              2       1     1727
160. URO        Uromyces appendiculatus                      1       1     1449
161. USM        Ustilago maydis                              3       2     2656
162. VFA        Vicia faba                                  39      33    29444
163. VIR        Vigna mungo                                  2       1     1314
164. VIR        Vigna radiata                                5       4     4354
165. VVC        Volvox carteri                              11       9    17792
166. WHT        Triticum aestivum                          100      79   115801
167. WHT        Triticum durum                               1       1      898
168. WHT        Triticum sp.                                 8       8     8441
169. WHT        Triticum vulgare                             1       1      965
170. YS1        Zygosaccharomyces fermentati                 1       1     5416
171. YS2        Saccharomycopsis fibuligera                  3       3     9339
172. YS4        Candida boidinii                             2       2     1863
173. YS5        Candida glabrata                             3       3     2758
174. YSA        Candida albicans                            11       8    13498
175. YSB        Candida tropicalis                          16      13    23751
176. YSC        Saccharomyces cerevisiae                  1131     933  1716468
177. YSCTY      Transposable element TY1                    53      44    52430
178. YSD        Saccharomyces diastaticus                    4       4     4319
179. YSD        Saccharomyces douglassi                      1       1     4072
180. YSE        Candida pelliculosa                          1       1     5327
181. YSF        Candida maltosa                              5       4     8167
182. YSG        Saccharomyces carlsbergensis                23      20    38053
183. YSH        Hansenula wingei                             3       3      720
184. YSI        Saccharomyces fibuligera                     2       2     6761
185. YSJ        Yarrowia lipolytica                          8       7    17412
186. YSK        Kluyveromyces lactis                        41      32    86137
187. YSM        Hansenula polymorpha                         3       3     8018
188. YSN        Kluyveromyces fragilis                       1       1     4193
189. YSO        Zygosaccharomyces rouxii                     5       3    15025
190. YSP        Schizosaccharomyces japonicus                1       1      108
191. YSP        Schizosaccharomyces malidevorans             1       1      107
192. YSP        Schizosaccharomyces octosporus               1       1      109
193. YSP        Schizosaccharomyces pombe                  135     114   206826
194. YSQ        Pichia pastoris                              3       3      899
195. YSS        Cephalosporium acremonium                    5       5     2757
196. YST        Yeast sp.                                   38      37    17556
197. YSU        Candida utilis                               4       4     7578
198. YSV        Saccharomyces uvarum                         1       1     2001
199. YSW        Kluyveromyces drosophilarum                  1       1     4757
200. YSX        Saccharomyces rosei                          1       1      278
201. YSY        Saccharomyces kluyveri                       5       4     2875
202. YSZ        Zygosaccharomyces bailii                     1       1     5415
203. ZAM        Zamia pumila                                 1       1     1813

     Total                                                3636    2976  4659180

ORGANELLE

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. ABGMT      Mitochondrion Absidia glauca                 1       1      596
  2. ACUCP      Chloroplast Acorus calamus                   1       1      103
  3. AEGCP      Chloroplast Aegilops crassa                  2       1     1436
  4. AEGCP      Chloroplast Aegilops squarrosa               1       1      203
  5. AKOMT      Mitochondrion Akodon aerosus                 6       6     2406
  6. AKOMT      Mitochondrion Akodon andinus                 1       1      401
  7. AKOMT      Mitochondrion Akodon boliviensis             2       2      802
  8. AKOMT      Mitochondrion Akodon jelskii                 3       3     1203
  9. AKOMT      Mitochondrion Akodon juninensis              1       1      401
 10. AKOMT      Mitochondrion Akodon kofordi                 1       1      401
 11. AKOMT      Mitochondrion Akodon mollis                  1       1      401
 12. AKOMT      Mitochondrion Akodon puer                    1       1      401
 13. AKOMT      Mitochondrion Akodon subfuscus               3       3     1203
 14. AKOMT      Mitochondrion Akodon torques                 3       3     1203
 15. ALFCP      Chloroplast Medicago sativa                  3       3     3460
 16. AMDCP      Chloroplast Acetabularia mediterranea        1       1     1175
 17. AMFMT      Mitochondrion Apis mellifera                 1       1     2949
 18. AMHCP      Chloroplast Amaranthus hybridus              1       1     1187
 19. AMTMT      Mitochondrion Ambystoma tigrinum             2       1      225
 20. ASIMT      Mitochondrion Ascobolus immersus             2       1     5142
 21. ASNMT      Mitochondrion Aspergillus amstelodami        1       1      624
 22. ASNMT      Mitochondrion Aspergillus nidulans          22      18    32837
 23. ASTCP      Chloroplast Avena sativa                     1       1     1623
 24. ATHCP      Chloroplast Arabidopsis thaliana             3       2     1499
 25. ATHMT      Mitochondrion Arabidopsis thaliana           2       1      880
 26. ATPCP      Chloroplast Atriplex patula                  1       1     1786
 27. ATPCP      Chloroplast Atriplex rosea                   1       1     1790
 28. BETMT      Mitochondrion Beta vulgaris                  4       4     5919
 29. BLSMT      Mitochondrion Boletus satanas                2       1      341
 30. BLYCP      Chloroplast Hordeum vulgare                 18      13    23006
 31. BNACP      Chloroplast Brassica napus                   1       1     1633
 32. BOLCP      Chloroplast Brassica oleracea                1       1      543
 33. BOLMT      Mitochondrion Brassica oleracea              1       1      549
 34. BOLMT      Mitochondrion Brassica sp.                   2       2      770
 35. BOMMT      Mitochondrion Bolomys amoenus                2       2      802
 36. BOVMT      Mitochondrion Bos taurus                     6       5    19563
 37. CEUMT      Mitochondrion Cervus unicolor                1       1     2682
 38. CHECP      Chloroplast Chenopodium album                1       1      207
 39. CHKMT      Mitochondrion Gallus domesticus              1       1     3571
 40. CHKMT      Mitochondrion Gallus gallus                  4       3     1153
 41. CHLCP      Chloroplast Chlorella ellipsoidea           12       9    15063
 42. CHPMT      Mitochondrion Pan troglodytes                1       1      896
 43. CNAMT      Mitochondrion Citrullus lanatus              1       1     4512
 44. COCMT      Mitochondrion Cochliobolus heterostrophus    1       1     1827
 45. CODCP      Chloroplast Codium fragile                   4       4      304
 46. COOCP      Chloroplast Coleochaete orbicularis          1       1     1587
 47. CPACP      Chloroplast Cyanophora paradoxa             11       8     2748
 48. CPACY      Cyanelle Cyanophora paradoxa                 5       5     5317
 49. CRECP      Chloroplast Chlamydomonas moewusii           3       2     8107
 50. CRECP      Chloroplast Chlamydomonas reinhardtii       42      33    37766
 51. CRECP      Chloroplast Chlamydomonas sp.                3       2     2346
 52. CREMT      Mitochondrion Chlamydomonas reinhardtii     26      22    21535
 53. CRRMT      Mitochondrion Corcorax melanorhamphos        1       1      239
 54. CRYCP      Chloroplast Cryptomonas phi                  2       1      715
 55. DARMT      Mitochondrion Daucus carota                  1       1      690
 56. DIPMT      Mitochondrion Dipodomys californicus         1       1      239
 57. DIPMT      Mitochondrion Dipodomys heermanni            1       1      239
 58. DIPMT      Mitochondrion Dipodomys panamintinus         2       2      478
 59. DRMMT      Mitochondrion Drosophila mauritania          1       1      976
 60. DROMT      Mitochondrion Drosophila melanogaster        9       6    16133
 61. DRSMT      Mitochondrion Drosophila simulans            1       1      975
 62. DRVMT      Mitochondrion Drosophila virilis             1       1      191
 63. DRYMT      Mitochondrion Drosophila yakuba              9       3    19938
 64. EGRCP      Chloroplast Euglena gracilis                35      24    62419
 65. EQQMT      Mitochondrion Equus quagga                   2       2      229
 66. FHEMT      Mitochondrion Fasciola hepatica              2       1      708
 67. FRGMT      Mitochondrion Rana catesbeiana               9       5    12109
 68. FSBMT      Mitochondrion Acipenser transmontano         2       1      156
 69. FSBMT      Mitochondrion Cichlosoma centrarchus         1       1      239
 70. FSBMT      Mitochondrion Cichlosoma citrinellum         1       1      239
 71. FSBMT      Mitochondrion Cichlosoma labiatum            1       1      239
 72. FSBMT      Mitochondrion Cichlosoma nicaraguense        1       1      239
 73. FSBMT      Mitochondrion Cyprinus carpio                3       3      873
 74. FSBMT      Mitochondrion Julidochromis regani           1       1      239
 75. FSBMT      Mitochondrion Salmo gairdneri                2       2      855
 76. FTRCP      Chloroplast Flaveria bidentis                1       1     1839
 77. FTRCP      Chloroplast Flaveria pringlei                1       1     1842
 78. GCOCP      Chloroplast Gracilaria tenuistipitata        1       1     1930
 79. GIBMT      Mitochondrion Hylobates lar                  1       1      896
 80. GORMT      Mitochondrion Gorilla gorilla                1       1      896
 81. HAMMT      Mitochondrion Cricetulus sp.                 1       1      880
 82. HNNMT      Mitochondrion Helianthus annuus              1       1     1336
 83. HUMMT      Mitochondrion Homo sapiens                  43      36    37585
 84. HYRMT      Mitochondrion Hydropotes inermis             1       1     2680
 85. IPBCP      Chloroplast Ipomoea batatas                  1       1     2004
 86. LEIKP      Kinetoplast Leishmania aethiopica            1       1      376
 87. LEIKP      Kinetoplast Leishmania major                 2       1     1031
 88. LEIKP      Kinetoplast Leishmania mexicana              3       3     2134
 89. LEIKP      Kinetoplast Leishmania tarentolae           22      16    28301
 90. LEIMT      Mitochondrion Leishmania tarentolae          1       1      189
 91. LEMMT      Mitochondrion Lemur catta                    1       1      895
 92. LIGCP      Chloroplast Ligularia calthifolia            1       1      103
 93. LMIMT      Mitochondrion Locusta migratoria             3       3     5118
 94. LUAMT      Mitochondrion Lupinus angustifolius          2       2     1330
 95. LUPMT      Mitochondrion Lupinus luteus                 2       1      630
 96. MACMT      Mitochondrion Macaca fascicularis            2       2     1598
 97. MACMT      Mitochondrion Macaca fuscata                 1       1      896
 98. MACMT      Mitochondrion Macaca mulatta                 1       1      896
 99. MACMT      Mitochondrion Macaca sylvanus                1       1      896
100. MCXMT      Mitochondrion Microxus mimus                 2       2      802
101. MMUMT      Mitochondrion Muntiacus reevesi              1       1     2682
102. MPOCP      Chloroplast Marchantia polymorpha           10       1   121024
103. MSQMT      Mitochondrion Aedes albopictus               9       9     3448
104. MUSMT      Mitochondrion Mus musculus                  22      15    20678
105. MZECP      Chloroplast Zea mays                        72      55    54150
106. MZECP      Chloroplast Zea perennis                     2       2     1456
107. MZEMT      Mitochondrion Zea mays                      53      45    80743
108. NEUMT      Mitochondrion Neurospora crassa             44      39    55773
109. NEUMT      Mitochondrion Neurospora intermedia          5       4    10804
110. NRACP      Chloroplast Neurachne munroi                 1       1     1990
111. NRACP      Chloroplast Neurachne tenuifolia             1       1     2010
112. OBECP      Chloroplast Oenothera berteriana             6       4     1813
113. OBEMT      Mitochondrion Oenothera berteriana          18      15    25036
114. OBOCP      Chloroplast Oenothera odorata                2       2      964
115. ODOMT      Mitochondrion Odocoileus virginianus         1       1     2677
116. OHOCP      Chloroplast Oenothera hookeri                2       2     2132
117. OLICP      Chloroplast Olisthodiscus luteus             1       1      714
118. ORAMT      Mitochondrion Pongo pygmaeus                 1       1      895
119. OSPMT      Mitochondrion Oenothera sp.                  2       2     1635
120. PALMT      Mitochondrion Paracentrotus lividus         17      17    21974
121. PANMT      Mitochondrion Podospora anserina            21      20    65750
122. PARMT      Mitochondrion Paramecium aurelia             9       9     8110
123. PARMT      Mitochondrion Paramecium primaurelia         4       3     5645
124. PARMT      Mitochondrion Paramecium sp.                34      17    12563
125. PARMT      Mitochondrion Paramecium tetraurelia         4       4     5844
126. PEACP      Chloroplast Pisum sativum                   36      30    55118
127. PEAMT      Mitochondrion Pisum sativum                  8       6    10694
128. PENCP      Chloroplast Pennisetum americanum            2       1      325
129. PETCP      Chloroplast Petunia hybrida                  7       7     5806
130. PETMT      Mitochondrion Petunia hybrida                4       3     2954
131. PETMT      Mitochondrion Petunia parodii                1       1     1774
132. PFAMT      Mitochondrion Plasmodium falciparum          1       1      935
133. PGYMT      Mitochondrion Paragyrodon sphaerosporus      2       1      337
134. PHVMT      Mitochondrion Phaseolus vulgaris             1       1       88
135. PIGMT      Mitochondrion Sus scrofa                     2       2      686
136. PILCP      Chloroplast Pilayella littoralis             1       1      353
137. PMGMT      Mitochondrion Placopecten magellanicus       5       5     4580
138. POGMT      Mitochondrion Thomomys townsendi             1       1      239
139. PZOCP      Chloroplast Pelargonium zonale               2       2      463
140. RADMT      Mitochondrion Raphanus sativus               2       2     5752
141. RATMT      Mitochondrion Rattus norvegicus             35      26    23507
142. RATMT      Mitochondrion Rattus rattus                  4       4     4388
143. RHS        Mitochondrion Rhizopogon achraeceorubens     2       1      341
144. RHS        Mitochondrion Rhizopogon subcaerulescens     2       1      341
145. RICCP      Chloroplast Oryza sativa                    11       9    12553
146. RICMT      Mitochondrion Oryza sativa                   5       5     8084
147. RYECP      Chloroplast Secale cereale                   9       7     9269
148. SAIMT      Mitochondrion Saimiri sciureus               1       1      893
149. SALCP      Chloroplast Sinapis alba                     8       6     9874
150. SAOCP      Chloroplast Saponaria officinalis            1       1     1252
151. SCOMT      Mitochondrion Schizophyllum commune          1       1     1120
152. SLMMT      Mitochondrion Physarum polycephalum          1       1     1536
153. SNICP      Chloroplast Solanum nigrum                   1       1     1501
154. SOLCP      Chloroplast Spirodela oligorhiza             9       9     6538
155. SOYCP      Chloroplast Glycine max                     14       9    16045
156. SOYMT      Mitochondrion Glycine max                    5       5     8683
157. SPFMT      Mitochondrion Spodoptera frugiperda          1       1      446
158. SPICP      Chloroplast Spinacia oleracea               47      38    79017
159. SRGCP      Chloroplast Sorghum bicolor                  1       1      862
160. SRGMT      Mitochondrion Sorghum sp.                    4       2     4768
161. STFMT      Mitochondrion Asterina pectinifera           1       1     3849
162. SUIMT      Mitochondrion Suillus cavipes                2       1      339
163. SUSMT      Mitochondrion Strongylocentrotus drobachiensis
                                                             2       2      965
164. SUSMT      Mitochondrion Strongylocentrotus franciscanus
                                                             3       3     1276
165. SUSMT      Mitochondrion Strongylocentrotus intermedius
                                                             2       2      960
166. SUSMT      Mitochondrion Strongylocentrotus pallidus    2       2      961
167. SUSMT      Mitochondrion Strongylocentrotus purpuratus
                                                             5       4    16929
168. TARMT      Mitochondrion Tarsius syrichta               1       1      895
169. TETMT      Mitochondrion Tetrahymena thermophila        1       1       53
170. TEYMT      Mitochondrion Tetrahymena pyriformis        14      13    12462
171. TOBCP      Chloroplast Nicotiana acuminata              1       1     2052
172. TOBCP      Chloroplast Nicotiana debneyi                3       3     4016
173. TOBCP      Chloroplast Nicotiana otophora               1       1     2052
174. TOBCP      Chloroplast Nicotiana plumbaginifolia        6       4     4169
175. TOBCP      Chloroplast Nicotiana tabacum               47      40   200231
176. TOBMT      Mitochondrion Nicotiana plumbaginifolia      2       1     1740
177. TOBMT      Mitochondrion Nicotiana tabacum              4       3     4074
178. TOMCP      Chloroplast Lycopersicon esculentum          1       1      103
179. TOMMT      Mitochondrion Lycopersicon esculentum        2       1      558
180. TRBKP      Kinetoplast Trypanosoma brucei              27      21    37228
181. TRBMT      Mitochondrion Trypanosoma brucei             4       4     2285
182. TRCKP      Kinetoplast Trypanosoma cruzi               27      27    11864
183. TREKP      Kinetoplast Trypanosoma equiperdum           2       2     2017
184. TREKP      Kinetoplast Trypanosoma evansi               3       2     1998
185. TRFKP      Kinetoplast Crithidia fasciculata           19      18    12549
186. TRFKP      Kinetoplast Crithidia oncopelti              6       3     1231
187. TRFMT      Mitochondrion Crithidia fasciculata          2       1     2034
188. TRFMT      Mitochondrion Crithidia oncopelti            1       1      149
189. TRLKP      Kinetoplast Leptomonas sp.                   1       1     2568
190. TRWKP      Kinetoplast Trypanosoma lewisi               2       2     2036
191. VFACP      Chloroplast Vicia faba                       6       6     9547
192. VFAMT      Mitochondrion Vicia faba                     4       4     9356
193. WARMT      Mitochondrion Pomatostomus isidori           1       1      239
194. WARMT      Mitochondrion Pomatostomus ruficeps          1       1      239
195. WARMT      Mitochondrion Pomatostomus superciliosus     1       1      239
196. WARMT      Mitochondrion Pomatostomus temporalis        1       1      239
197. WHTCP      Chloroplast Triticum aestivum               28      26    26229
198. WHTMT      Mitochondrion Triticum aestivum             33      24    28296
199. XELMT      Mitochondrion Xenopus laevis                 6       5    25196
200. XERMT      Mitochondrion Xerocomus chrysenteron         2       1      339
201. YSCMT      Mitochondrion Saccharomyces cerevisiae     191     171   142613
202. YSGMT      Mitochondrion Saccharomyces carlsbergensis
                                                             1       1      149
203. YSKMT      Mitochondrion Kluyveromyces lactis          78      39     3699
204. YSKMT      Mitochondrion Kluyveromyces thermotolerans
                                                             5       3     1287
205. YSLMT      Mitochondrion Torulopsis glabrata           10       9     6200
206. YSPMT      Mitochondrion Schizosaccharomyces pombe     10       9    13361
207. YSSMT      Mitochondrion Cephalosporium acremonium      2       2     3029
208. YSTMT      Mitochondrion Yeast sp.                      4       4     5196
209. YSUMT      Mitochondrion Candida utilis                 1       1      306
210. YSVMT      Mitochondrion Saccharomyces uvarum           3       3     2296

     Total                                                1569    1271  1848854

BACTERIAL

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. ABC        Acetobacter aceti                            1       1     1624
  2. ABC        Acetobacter xylinum                          1       1     9540
  3. AC2        Plasmid pAC27                                1       1      803
  4. ACC        Acinetobacter calcoaceticus                 13      10    27286
  5. ACC        Acinetobacter sp.                            4       3     5193
  6. ACH        Achromobacter sp.                            1       1     2414
  7. ACL        Acholeplasma laidlawii                       3       2     1858
  8. ACN        Actinobacillus actinomycetemcomitans         1       1     3842
  9. ACN        Actinobacillus pleuropneumoniae              1       1     3831
 10. ACO        Acetogenium kivui                            1       1     2477
 11. ACY        Actinomyces naeslundii                       1       1     2160
 12. ACY        Actinomyces viscosus                         2       1     1850
 13. AER        Aeromicrobium erythreus                      1       1     1463
 14. AFA        Alcaligenes eutrophus                        9       9    23911
 15. AFA        Alcaligenes faecalis                         4       4     8591
 16. AFA        Plasmid pJP4                                 7       5    11105
 17. AHA        Aphanocapsa sp.                              1       1     1920
 18. AMC        Acidaminococcus fermentans                   2       1     3245
 19. AMS        Ampullariella sp.                            1       1     1892
 20. ANA        Anabaena 7120                                8       6    15235
 21. ANA        Anabaena sp.                                27      19    26386
 22. ANI        Anacystis nidulans                          32      26    36901
 23. ANN        Actinoplanes missouriensis                   2       1     1639
 24. APM        Anaplasma marginale                          5       4    11487
 25. AQU        Agmenellum quadruplicatum                    3       3     5497
 26. ARF        Archaeoglobus fulgidus                       3       2     1727
 27. ARG        Arthrobacter sp.                             1       1     2075
 28. ATU        Agrobacterium rhizogenes                     8       6    14645
 29. ATU        Agrobacterium sp.                            1       1     1599
 30. ATU        Agrobacterium tumefaciens                   38      31    62767
 31. AVH        Azotobacter chroococcum                      1       1     1654
 32. AVI        Azotobacter vinelandii                      24      20    80709
 33. AZS        Azospirillum brasilense                      1       1     1910
 34. BAD        Bacillus caldolyticus                        1       1     1147
 35. BAL        Bacillus caldotenax                          5       5     5550
 36. BAM        Bacillus amyloliquefaciens                  19      16    17715
 37. BAN        Bacillus anthracis                           4       4    14401
 38. BBR        Bacillus brevis                             11      10    25879
 39. BC1        Plasmid pBC16                                1       1      257
 40. BCC        Bacillus coagulans                           2       2     2433
 41. BCE        Bacillus cereus                             18      14    17016
 42. BCI        Bacillus circulans                           9       6    12823
 43. BCQ        Bacillus Q                                   5       5      786
 44. BFI        Bacillus firmus                              1       1     1434
 45. BIF        Bifidobacterium longum                       1       1     1767
 46. BLI        Bacillus licheniformis                      21      18    19815
 47. BLL        Bacillus lautus                              1       1     2323
 48. BMA        Bacillus macerans                            1       1     2744
 49. BME        Bacillus megaterium                         24      19    31050
 50. BNG        Bacteroides gingivalis                       1       1     1420
 51. BNO        Bacteroides nodosus                          6       5     4828
 52. BNR        Bacteroides fragilis                         6       5     8556
 53. BOR        Borrelia burgdorferei                        7       6     3181
 54. BPE        Bordetella bronchiseptica                    1       1     4936
 55. BPE        Bordetella parapertussis                     3       3     4749
 56. BPE        Bordetella pertussis                        21      15    42985
 57. BPO        Bacillus polymyxa                            4       3     8764
 58. BPU        Bacillus pumilus                            12       9     8915
 59. BRL        Brevibacterium epidermidis                   2       1     1721
 60. BRL        Brevibacterium lactofermentum                9       8    22049
 61. BRU        Brucella abortus                             2       2     5253
 62. BS2        Plasmid pBS2                                 1       1     2279
 63. BSN        Bacillus natto                               1       1      676
 64. BSP        Bacillus sp.                                22      21    48210
 65. BSS        Bacillus sphaericus                         16      12    30172
 66. BST        Bacillus stearothermophilus                 41      39    62425
 67. BSU        Bacillus subtilis                          274     216   357850
 68. BTH        Bacillus thuringiensis                      67      52   149803
 69. BTT        Thermoactinomyces thalpophilus               2       2     1036
 70. BUT        Butyrivibrio fibrisolvens                    2       2     4411
 71. C11        Plasmid pColBM-C1139                         1       1     2149
 72. C1B        Plasmid Colicin B4                           3       3     1561
 73. CAJ        Campylobacter coli                           3       3     4985
 74. CAJ        Campylobacter fetus                          1       1     3974
 75. CAJ        Campylobacter jejuni                         4       4     5410
 76. CB2        Plasmid Colicin B2                           1       1      360
 77. CCR        Caulobacter crescentus                      24      24    15105
 78. CD1        Plasmid Colicin D                            1       1     1099
 79. CDC        Caldocellum saccharolyticum                  6       5    16338
 80. CE1        Plasmid Colicin E1                          42      31    17722
 81. CE2        Plasmid Colicin E2                           5       5     4629
 82. CE3        Plasmid Colicin E3                           1       1      392
 83. CE5        Plasmid Colicin E5-099                       2       2     2401
 84. CE8        Plasmid Colicin E8                           1       1     1268
 85. CE9        Plasmid Colicin E9                           2       2     2148
 86. CEC        Plasmid Colicin E3-CA38                      8       3     4883
 87. CEC        Plasmid Colicin E6-CT14                      2       2     4675
 88. CFI        Cellulomonas fimi                            7       7     5787
 89. CFI        Cellulomonas uda                             1       1     1828
 90. CFR        Citrobacter freundii                         6       5     4522
 91. CFX        Chloroflexus aurantiacus                     4       3     3568
 92. CGF        Chlorogloeopsis fritschii                    1       1      210
 93. CH1        Plasmid pCHL1                                2       2     8101
 94. CHT        Chlamydia psittaci                           5       5     6932
 95. CHT        Chlamydia trachomatis                       36      22    61362
 96. CIA        Plasmid Colicin Ia                           1       1     3727
 97. CIB        Plasmid Colicin Ib                           5       5    10934
 98. CIB        Plasmid Colicin Ib-P9                        2       2     2373
 99. CLA        Plasmid Colicin A                            4       4     3950
100. CLD        Plasmid CloDF13                             13       1     9957
101. CLK        Plasmid Colicin K                            2       2      815
102. CLN        Plasmid Colicin V                            1       1      412
103. CLN        Plasmid Colicin V-K30                        1       1     1465
104. CLN2       Plasmid Colicin V2-K94                       1       1      550
105. CLO        Clostridium acetobutylicum                   9       7    14479
106. CLO        Clostridium acidiurici                       1       1     2266
107. CLO        Clostridium botulinum                        1       1     4835
108. CLO        Clostridium cellulolyticum                   1       1     2405
109. CLO        Clostridium difficile                        4       3    10451
110. CLO        Clostridium innocuum                         1       1     1544
111. CLO        Clostridium pasteurianum                    25      17    18163
112. CLO        Clostridium perfringens                     10       9     7118
113. CLO        Clostridium sordellii                        1       1     1504
114. CLO        Clostridium tetani                           3       3    10529
115. CLO        Clostridium thermoaceticum                   1       1     1965
116. CLO        Clostridium thermocellum                    10       8    16656
117. CLO        Clostridium thermohydrosulfuricum            1       1     4839
118. CLO        Clostridium thermosulfurogenes               2       2     4258
119. CLT        Calothrix sp.                               12      12     1936
120. CLV        Plasmid ColVBtrp                             1       1      441
121. CN2        Plasmid pCN2                                 1       1      117
122. CN3        Plasmid pCN3                                 1       1      114
123. COR        Corynebacterium diphtheriae                  2       1     2529
124. COR        Corynebacterium glutamicum                   9       6    16234
125. COR        Corynebacterium nephridii                    1       1      615
126. COR        Corynebacterium sp.                          2       2     2512
127. COX        Coxiella burnetii                            3       3     5956
128. CPC        Cryptococcus albidus                         2       1     2984
129. CPC        Cryptococcus neoformans                      1       1     2029
130. CYA        Cyanobacterium nostoc                        2       2     4220
131. CYT        Cytophaga lytica                             1       1     1509
132. DCG        Dictyoglomus thermophilum                    3       3     6900
133. DEI        Deinococcus radiodurans                      2       2     4970
134. DMO        Desulfurococcus mobilis                      7       7     9730
135. DSB        Desulfobacterium autotrophicum               1       1     1376
136. DSB        Desulfobacterium niacini                     1       1     1375
137. DSB        Desulfobacterium vacuolatum                  1       1     1383
138. DSF        Desulfococcus multivorans                    1       1     1372
139. DSI        Desulfomicrobium baculatus                   1       1     1379
140. DSL        Desulfomonas pigra                           1       1     1381
141. DSO        Desulfotomaculum orientis                    1       1     1402
142. DSO        Desulfotomaculum ruminis                     1       1     1368
143. DSP        Desulfobacter curvatus                       1       1     1396
144. DSP        Desulfobacter hydrogenophilus                1       1     1390
145. DSP        Desulfobacter latus                          1       1     1373
146. DSP        Desulfobacter sp.                            2       2     2869
147. DSU        Desulfobulbus propionicus                    1       1     1371
148. DSU        Desulfobulbus sp.                            1       1     1365
149. DSV        Desulfosarcina variabilis                    1       1     1527
150. DVU        Desulfovibrio africanus                      1       1     1382
151. DVU        Desulfovibrio baarsii                        2       2     1589
152. DVU        Desulfovibrio baculatus                      2       1     2589
153. DVU        Desulfovibrio desulfuricans                  5       5     4678
154. DVU        Desulfovibrio fructosovorans                 1       1     3180
155. DVU        Desulfovibrio gigas                          2       2     4126
156. DVU        Desulfovibrio multispirans                   1       1      186
157. DVU        Desulfovibrio salexigens                     2       2     2107
158. DVU        Desulfovibrio sapovorans                     1       1     1395
159. DVU        Desulfovibrio vulgaris                       9       9    11185
160. EAM        Erwinia amylovora                            2       2     1641
161. ECA        Erwinia carotovora                          14      12    17877
162. ECB        Erwinia herbicola                            1       1     4902
163. ECH        Erwinia chrysanthemi                        19      13    27706
164. ECO        Escherichia coli                          1716    1188  1848929
165. ECO        Escherichia fergusonii                       1       1     3133
166. ECO        F sex factor plasmid                         3       3     5370
167. ECO        Plasmid Colicin BM-Cl139                     3       3     3707
168. ECO        Plasmid pCU1                                 1       1     2056
169. ECO        Plasmid pF166                                1       1     2133
170. EHP        Ectothiorhodospira halophila                 1       1      121
171. EHR        Ehrlichia risticii                           2       1     1498
172. EHV        Ectothiorhodospira vacuolata                 1       1      120
173. ENC        Enterococcus faecium                         1       1     1900
174. ENR        Plasmid ENTR                                 2       2     1273
175. ENS        Plasmid ENT                                  1       1      866
176. ENT        Enterobacter aerogenes                       6       6     5330
177. ENT        Enterobacter agglomerans                     3       3     1272
178. ENT        Enterobacter cloacae                         8       8     9262
179. ETA        Edwardsiella tarda                           2       1      306
180. EUB        Eubacterium sp.                              6       5    10586
181. FA3        Plasmid pFA3                                 1       1     1597
182. FDI        Fremyella diplosiphon                       26      20    29933
183. FIB        Fibrobacter succinogenes                     2       2     3736
184. FPL        Plasmid F                                   30      23    37662
185. FRA        Frankia sp.                                  3       2     3758
186. FRN        Francisella tularensis                       1       1     1233
187. FVB        Flavobacterium heparinum                     1       1     1528
188. FVB        Flavobacterium okeanokoites                  8       8     9873
189. FVB        Flavobacterium sp.                           4       4     6028
190. GS5        Plasmid pGS05                                1       1     1357
191. HAF        Hafnia alvei                                 1       1     2961
192. HAL        Halobacterium cutirubrum                     7       5     8712
193. HAL        Halobacterium halobium                      36      26    45031
194. HAL        Halobacterium salinarium                     1       1      606
195. HAL        Halobacterium sp.                           14      13    22487
196. HAL        Haloferax volcanii                           1       1     3566
197. HCL        Heliobacterium chlorum                       1       1     1512
198. HCU        Halobacterium cutirubrum                     2       1     3116
199. HEC        Helicobacter felis                           3       2     2887
200. HEC        Helicobacter mustelae                        2       1     1435
201. HEH        Haemophilus haemolyticus                     2       2     3186
202. HEI        Haemophilus influenzae                      96      41    17798
203. HEP        Haemophilus parainfluenza                    5       5      853
204. HLF        Haloferax sp.                                4       3     1187
205. HMO        Halococcus morrhuae                          2       2     4402
206. HPT        Herpetosiphon aurantiacus                    1       1     1484
207. HV2        Plasmid pHV2                                 1       1     6354
208. IM13       Plasmid pIM13                                1       1     2246
209. INC        Plasmid incB                                 1       1      352
210. INC        Plasmid incI-1                               1       1      418
211. INC        Plasmid incI-gamma                           1       1      417
212. INS        Insertion sequence                          10      10     4266
213. INS        Insertion sequence IS1                       5       4     3243
214. INS        Insertion sequence IS150                     2       1     1443
215. INS        Insertion sequence IS186                     2       2     2677
216. INS        Insertion sequence IS2                       4       4      517
217. INS        Insertion sequence IS26                      1       1      859
218. INS        Insertion sequence IS30                      1       1     1221
219. INS        Insertion sequence IS4                       1       1     1426
220. INS        Insertion sequence IS476                     1       1     1225
221. INS        Insertion sequence IS493                     1       1     1641
222. INS        Insertion sequence IS5                       3       2     1570
223. INS        Insertion sequence IS891                     1       1     1351
224. INS        Insertion sequence ISHS1                     1       1     1449
225. JD1        Plasmid pJD1                                 2       1     4207
226. JS3        Plasmid pJS37                                3       3      252
227. KAE        Klebsiella aerogenes                        18      16    23367
228. KCI        Kluyvera citrophila                          1       1     2734
229. KPN        Klebsiella pneumoniae                       71      55   109716
230. KPN        Plasmid pJHC-MW1                             1       1     1352
231. KPO        Klebsiella oxytoca                           2       2     4901
232. KY1        Plasmid pKY1                                 1       1     3022
233. KYM        Plasmid pKYM                                 1       1     2083
234. LAC        Lactococcus lactis                          13      12    24807
235. LAE        Listonella ordalii                           2       1      120
236. LAE        Listonella tubiashii                         2       1      120
237. LB1        Plasmid p1                                   1       1      533
238. LB3        Lactobacillus 30a                            3       2     2189
239. LBA        Lactobacillus acidophilus                    1       1      400
240. LBB        Lactobacillus bulgaricus                     1       1      536
241. LBD        Lactobacillus delbrueckii                    7       4     5405
242. LBH        Lactobacillus helveticus                     1       1     3292
243. LBP        Lactobacillus plantarum                      3       2     3664
244. LBP        Plasmid pC30il                               1       1     2140
245. LBP        Plasmid pLP1                                 1       1     2093
246. LCA        Lactobacillus casei                          6       6     9787
247. LCO        Lactobacillus confusus                       1       1     1320
248. LEP        Leptospira biflexa                           2       2     4788
249. LEP        Leptospira interrogans                       2       1     3244
250. LIS        Listeria monocytogenes                       3       2     3940
251. LM0        Plasmid pLM020                               1       1     2330
252. LPN        Legionella pneumophila                       2       2     2005
253. LS1        Plasmid pLS11                                1       1      253
254. MBA        Methanobacterium ivanovii                    2       1     1353
255. MBF        Methanobacterium formicicum                  1       1     3597
256. MBH        Methanobrevibacter smithii                   3       3     7221
257. MBI        Methanobacterium thermoautotrophicum        10       7    26621
258. MBI        Plasmid pME2001                              1       1     1440
259. MBO        Moraxella bovis                              2       2     5044
260. MBO        Moraxella lacunata                           1       1      969
261. MBO        Moraxella sp.                                2       1     3034
262. MCL        Mastigocladus laminosus                      1       1     1701
263. MEC        Micromonospora echinospora                   1       1      398
264. MEF        Methanothermus fervidus                      9       8    18721
265. MEH        Methanospirillum hungatei                    1       1      295
266. MEN        Methanolobus tindarius                       1       1      128
267. MES        Methanosarcina barkeri                       5       3    13117
268. MLC        Methylococcus capsulatus                     1       1     2463
269. MLU        Micrococcus luteus                          10       9    19465
270. MLY        Micrococcus lysodeikticus                    1       1      166
271. MPL        Mycoplasma-like organism                     1       1     1535
272. MSG        Mycobacterium bovis                          7       6     7320
273. MSG        Mycobacterium leprae                         7       5    11027
274. MSG        Mycobacterium tuberculosis                  15       9    18387
275. MSG        Plasmid pAL5000                              1       1     4837
276. MTB        Methylobacterium extorquens                  1       1     4500
277. MTB        Methylobacterium sp.                         1       1     2791
278. MTB        Methylobacterium specialis                   2       1     2211
279. MTF        Methylobacillus flagellatum                  1       1     1349
280. MV1        Plasmid pMV158                               1       1     2436
281. MVA        Methanococcus vannielii                     19      17    28753
282. MVO        Methanococcus voltae                        11      10    15241
283. MVT        Methanococcus thermolithotrophicus           4       3     2820
284. MXA        Myxococcus xanthus                          16      15    27127
285. MXB        Lysobacter enzymogenes                       3       2     3218
286. MYC        Mycoplasma capricolum                       14      13    21175
287. MYC        Mycoplasma hyopneumoniae                     3       3     1928
288. MYC        Mycoplasma mycoides                          4       4     2716
289. MYC        Mycoplasma sp.                              41      37    51236
290. MYC        Plasmid pADB201                              1       1     1717
291. NAH        Plasmid NAH7 (from P. putida)                6       5     3771
292. NAT        Natronobacterium pharaonis                   1       1     1015
293. NG2        Plasmid pNG2                                 1       1     1810
294. NGO        Neisseria flavescens                         1       1     1228
295. NGO        Neisseria gonorrhoeae                       63      55    50544
296. NGO        Neisseria meningitidis                      12       8     9940
297. NOC        Nocardia mediterranei                        3       3      450
298. NOS        Nostoc commune                               1       1     4241
299. NR1        Plasmid NR1                                  4       3     6463
300. NT1        Plasmid NTP1                                 2       2     1440
301. NT1        Plasmid NTP16                                1       1     2730
302. P15        Plasmid P15A                                 2       2     1226
303. P18X       Plasmid pACYC184                             2       2      171
304. P23        Plasmid pMM2-3                               2       2      182
305. P307       Plasmid P307                                 3       3     4629
306. P53        Plasmid pMM5-3                               4       4      429
307. P55        Plasmid pMM5-5                               4       4      420
308. PAC        Plasmid P177                                 1       1      345
309. PAM        Plasmid PAM177                               1       1     1443
310. PAS        Pasteurella haemolytica                      4       3    15958
311. PAZ        Plasmid pAZ1                                 1       1      808
312. PB0        Plasmid pUB110                               9       8    12606
313. PB2        Plasmid pUB112                               1       1      901
314. PBF4       Plasmid pBF4                                 1       1     1041
315. PBW        Plasmid pBWH77                               2       2     1623
316. PC1        Plasmid pC194                                2       2     3946
317. PC2        Plasmid pC221                                2       1     4555
318. PDE        Paracoccus denitrificans                    10       7    17422
319. PDG        Plasmid pDGO100                              2       2     3683
320. PDU        Plasmid pDU1358                              2       2     5076
321. PE1        Plasmid pE194                                7       3     5039
322. PE2        Plasmid pED208                               2       2     5640
323. PHL        Plasmid pHly152                              1       1     8215
324. PI25       Plasmid pI258                                5       4    12140
325. PIJ        Plasmid pIJ101                               2       2     9188
326. PIP        Plasmid pIP401                               2       2      383
327. PIP        Plasmid pIP630                               1       1     1883
328. PIP11      Plasmid pIP1100                              1       1     1386
329. PIP404     Plasmid pIP404                               4       3    15188
330. PJH        Plasmid pJH1                                 1       1     1489
331. PJM1       Plasmid pJM1                                 1       1     3581
332. PJR        Plasmid PJR225                               1       1     1527
333. PKL        Plasmid pKLH1                                1       1      160
334. PKL        Plasmid pKLH102                              2       2      351
335. PKL        Plasmid pKLH104                              1       1      131
336. PKL        Plasmid pKLH2                                2       2      674
337. PKL        Plasmid pKLH201                              1       1      153
338. PKM        Plasmid pKM101                               1       1     1797
339. PLB        Plasmid pLB1                                 1       1     2190
340. PLM        Plasmid pAA3.7X                              3       1     9583
341. PLP        Plasmid pSa                                  1       1     1447
342. PME        Plasmid pMEA100                              1       1      150
343. PMM        Plasmid pMM110                               1       1      240
344. PMO        Plasmid pMON234                              1       1      997
345. PNE        Plasmid pNE131                               2       1     2355
346. PNS        Plasmid pNS1                                 1       1     3879
347. PNS        Plasmid pNS1981                              4       3     1819
348. PO2        Plasmid pOAD2                                2       2     2914
349. PR1        Plasmid R1                                  13      10     7500
350. PR2        Plasmid R1126                                1       1      428
351. PR6        Plasmid R6-5                                 2       1      858
352. PRC        Plasmid R                                    1       1     1487
353. PRI        Plasmid PRI13                                2       1     2234
354. PRM        Morganella morganii                          2       2     1831
355. PRM        Proteus mirabilis                            7       6    16319
356. PRM        Proteus vulgaris                            13       8    14186
357. PRO        Providencia sp.                              1       1     1135
358. PRO        Providencia stuartii                         1       1     3889
359. PRS        Propionibacterium shermanii                  3       2     4951
360. PS1        Streptomyces lividans plasmid pS1            1       1       75
361. PSA        Plasmid pSA2100                              1       1       98
362. PSC        Plasmid pSC101                              16      10    16807
363. PSE        Plasmid pCMS1                                1       1     1322
364. PSE        Pseudomonas aeruginosa                      99      77   110225
365. PSE        Pseudomonas amyloderamosa                    5       2     4488
366. PSE        Pseudomonas cepacia                          2       2     5867
367. PSE        Pseudomonas fluorescens                     10       8    17694
368. PSE        Pseudomonas fragi                            2       2     1682
369. PSE        Pseudomonas paucimobilis                     1       1     1080
370. PSE        Pseudomonas pseudoalcaligenes                1       1     2040
371. PSE        Pseudomonas putida                          28      26    68302
372. PSE        Pseudomonas sp.                             25      22    39293
373. PSE        Pseudomonas syringae                        11      10    27701
374. PSE        Pseudomonas testosteroni                     2       2     2435
375. PSE        TOL Plasmid (from Pseudomonas putida)       11       7     9788
376. PSE        Zoogloea ramigera                            1       1     1524
377. PSM        SYM megaplasmid(from R. meliloti)            9       8     5150
378. PSN        Plasmid pSN2                                 1       1     1288
379. PT1        Plasmid pT181                                7       4     5479
380. PTB        Plasmid pTB913                               1       1     1200
381. PWM        Plasmid pWM5                                 1       1      569
382. PWP        Plasmid pWP7b                                1       1     1370
383. PWR        Plasmid PWR60                                1       1     4832
384. PYR        Pyrodictium occultum                         4       4     2077
385. PYW        Pyrococcus woesi                             2       1      124
386. R10        Plasmid R100                                25      17    26157
387. R11        Plasmid R1162                                5       5     2389
388. R12        Plasmid R124                                 1       1      272
389. R14        Plasmid R144                                 1       1      801
390. R26        Plasmid R26                                  1       1     1541
391. R27        Plasmid R27                                  1       1     1507
392. R36        Plasmid R386                                 1       1      441
393. R37        Plasmid R387                                 1       1     1160
394. R38        Plasmid R388                                 2       2     3204
395. R41        Plasmid R401                                 1       1     1857
396. R45        Plasmid R485                                 1       1      591
397. R46        Plasmid R46                                  3       3     2859
398. R48        Plasmid R483                                 1       1     1618
399. R53        Plasmid R538                                 3       2     1712
400. R65        Plasmid R65                                  2       2     1380
401. R67        Plasmid R67                                  1       1      293
402. R6K        Plasmid R6K                                  7       6     1894
403. R75        Plasmid R751                                 4       4     1697
404. R77        Plasmid R773                                 1       1     4347
405. RA1        Plasmid RA1                                  1       1      758
406. RBH        Plasmid pRBH1                                2       2     1521
407. RBL        Rhodopseudomonas acidophila                  1       1     1491
408. RBL        Rhodopseudomonas blastica                    1       1    12368
409. RCA        Rhodobacter capsulatus                      32      26    52831
410. RDC        Rhodocyclus purpureus                        1       1     1478
411. REI        Plasmid pRE-I                                1       1      439
412. RER        Rhodococcus erythropolis                     2       1     2070
413. RER        Rhodococcus fascians                         2       1      121
414. RGN        Plasmid RGN238                               2       1     2427
415. RHA        Azorhizobium caulinodans                     4       2     3849
416. RHB        Bradyrhizobium japonicum                    23      18    34554
417. RHF        Rhizobium fredii                             1       1     2862
418. RHH        Rhizobium phaseoli                           4       4     3681
419. RHI        Bradyrhizobium sp.                           2       2     6665
420. RHI        Rhizobium sp.                                8       7    10894
421. RHJ        Rhizobium japonicum                         10       8    10225
422. RHL        Plasmid pRL1JI                               5       1    12055
423. RHL        Rhizobium leguminosarum                     13      13    19168
424. RHM        Rhizobium meliloti                          52      45    93945
425. RHR        Rhizobium IRc78                              2       2     2199
426. RHT        Rhizobium trifolii                           5       5     6886
427. RIA        Plasmid Ri                                   1       1    21126
428. RIR        Rickettsia conorii                           1       1      539
429. RIR        Rickettsia prowazekii                        5       4     9706
430. RIR        Rickettsia rickettsii                        4       4     8555
431. RIR        Rickettsia tsutsugamushi                     2       2     5186
432. RIR        Rickettsia typhi                             2       2     1067
433. RIR        Rochalimaea quintana                         1       1     1493
434. RK2        Plasmid RK2                                 10       7     9952
435. RMV        Rhodomicrobium vannielii                     1       1     1484
436. ROS        Roseburia cecicola                           1       1     1031
437. RP1        Plasmid RP1                                  1       1     2709
438. RP4        Plasmid RP4                                  5       5     2997
439. RSF        Plasmid RSF1010                              7       7    10521
440. RSP        Rhodospirillum rubrum                       11      11    21804
441. RSS        Rhodobacter sphaeroides                     17      17    14217
442. RTS        Plasmid Rts1                                 2       1     1855
443. RUA        Ruminobacter amylophilus                     2       1     2867
444. RUM        Ruminococcus albus                           1       1     2180
445. RVI        Rhodopseudomonas viridis                     5       4     3885
446. SA2        Plasmid pSAM2                                3       3      866
447. SAC        Sulfolobus acidocaldarius                    6       5    15339
448. SAU        Stigmatella aurantiaca                       2       1     1300
449. SB2        Plasmid pSB24.2                              2       2     7412
450. SCP        Plasmid SCP1                                 1       1     2513
451. SE2        Plasmid pSE211                               2       2     3017
452. SER        Saccharopolyspora erythraea                 10       7     8075
453. SHD        Shigella dysenteriae                         7       7    11010
454. SHF        Plasmid pMYSH6000                            1       1     4472
455. SHF        Shigella flexneri                           12      10    24401
456. SHS        Shigella sonnei                             11      11     6738
457. SLP1       Plasmid SLP1                                 3       3      630
458. SMA        Serratia marcescens                         31      25    35311
459. SMA        Serratia sp.                                 1       1     2570
460. SME        Spiroplasma melliferum                       1       1     1510
461. SME        Spiroplasma sp.                              1       1     5025
462. SMY        Plasmid pSL2                                 1       1      345
463. SMY1       Plasmid pSL1                                 2       2      633
464. SPA        Spirochaeta aurantia                         1       1     1257
465. SPO        Sporolactobacillus laevis                    1       1      118
466. SPO        Sporosarcina ureae                           2       1      116
467. SPU        Spirulina platensis                          1       1     5273
468. SSO        Sulfolobus shibatae                          1       1     1495
469. SSO        Sulfolobus solfataricus                      6       6     5873
470. SSP        Sulfolobus sp.                               7       4    19617
471. STA        Plasmid pT48                                 1       1     2475
472. STA        Staphylococcus aureus                       75      56    85940
473. STA        Staphylococcus carnosus                      1       1      720
474. STA        Staphylococcus epidermidis                   1       1      423
475. STA        Staphylococcus haemolyticus                  1       1     1087
476. STA        Staphylococcus hyicus                        1       1     2212
477. STA        Staphylococcus mutans                        1       1     2288
478. STA        Staphylococcus simulans                      1       1     1486
479. STA        Staphylococcus staphylolyticus               1       1     1825
480. STM        Streptomyces antibioticus                    1       1     1567
481. STM        Streptomyces avidinii                        1       1      638
482. STM        Streptomyces azureus                         1       1     1521
483. STM        Streptomyces clavuligerus                    6       4     5745
484. STM        Streptomyces coelicolor                     15      12    17749
485. STM        Streptomyces fradiae                         6       6    11455
486. STM        Streptomyces glaucescens                     6       4     6431
487. STM        Streptomyces griseus                        16      12    25048
488. STM        Streptomyces hygroscopicus                   7       7     6374
489. STM        Streptomyces lavendulae                      2       2     2078
490. STM        Streptomyces limosus                         1       1     2291
491. STM        Streptomyces lividans                       25      20    14900
492. STM        Streptomyces plicatus                        2       2     1245
493. STM        Streptomyces rochei                          4       4     2390
494. STM        Streptomyces sp.                            47      39    49732
495. STM        Streptomyces thermotolerans                  1       1     1260
496. STM        Streptomyces vinaceus                        1       1     1119
497. STR        Plasmid pAM-beta-1                           3       3     6001
498. STR        Plasmid pMK157                               1       1     1920
499. STR        Streptococcus equisimilis                    1       1     2568
500. STR        Streptococcus faecalis                       6       6     8343
501. STR        Streptococcus lactis                         8       7     8222
502. STR        Streptococcus mutans                        15      13    46945
503. STR        Streptococcus pneumoniae                    49      34    55746
504. STR        Streptococcus pyogenes                      24      18    36619
505. STR        Streptococcus sanguis                        3       3     8094
506. STR        Streptococcus sobrinus                       1       1     4995
507. STR        Streptococcus sp.                           17      14    31406
508. STV        Streptoverticillum sp.                       1       1     1130
509. STY        Plasmid R1767                                1       1     1519
510. STY        Plasmid R64                                  1       1      482
511. STY        Salmonella infantis                          1       1     3430
512. STY        Salmonella potsdam                           1       1     1727
513. STY        Salmonella rubislaw                          1       1     1479
514. STY        Salmonella sp.                               7       6     6050
515. STY        Salmonella typhimurium                     174     142   204225
516. SYC        Synechocystis sp.                           15      11    18768
517. SYN        Synechococcus sp.                           15      15    38283
518. TBA        Thermophilic bacterium                       6       3    11617
519. TDT        Trichodesmium thiebautii                     1       1      357
520. TFE        Plasmid pTF-FC2                              1       1      329
521. TFE        Thiobacillus acidophilus                     9       4      599
522. TFE        Thiobacillus ferrooxidans                    9       7    14624
523. TFE        Thiobacillus sp.                             1       1     2172
524. THA        Thermoplasma acidophilum                     3       3     7703
525. THC        Thermococcus celer                           2       2     1312
526. THF        Thermomonospora fusca                        1       1      264
527. THP        Thermofilum pendens                          1       1      240
528. THR        Thermomicrobium roseum                       1       1     1528
529. TIP        Plasmid pTiAch5                              1       1     1164
530. TIP        Plasmid pTiAg162                             1       1      420
531. TIP        Plasmid pTiB6S3                              1       1     4203
532. TIP        Plasmid pTiC58                               4       4     5214
533. TIP        Plasmid Ti (from A. tumefaciens)            61      52   120107
534. TMO        Thermotoga maritima                          2       2     2763
535. TRN        Transposon gamma-delta                       6       3     1092
536. TRN        Transposon Tn10                              1       1      830
537. TRN        Transposon Tn21                              1       1     1333
538. TRN        Transposon Tn2501                            1       1      480
539. TRN        Transposon Tn3                               2       2      389
540. TRN        Transposon Tn3411                            2       1     2925
541. TRN        Transposon Tn4521                            1       1     1315
542. TRN        Transposon Tn5                               1       1     2040
543. TRN        Transposon Tn501                             1       1       86
544. TRN        Transposon Tn602                             4       4      639
545. TRN10      Transposon Tn10                             11       4     6024
546. TRN15      Transposon Tn1525                            1       1     1721
547. TRN16      Transposon Tn1681                            1       1      658
548. TRN17      Transposon Tn1721                            8       8     1797
549. TRN1771    Transposon Tn1771                            3       3      348
550. TRN21      Transposon Tn21                              4       4     6671
551. TRN25      Transposon Tn2501                            1       1     1539
552. TRN26      Transposon Tn2680                            1       1      194
553. TRN3       Transposon Tn3                              10       8     6351
554. TRN34      Transposon Tn3411                            1       1     1321
555. TRN43      Transposon Tn4351                            2       1     1982
556. TRN431     Transposon Tn431                             3       3     2405
557. TRN4551    Transposon Tn4551                            1       1     2080
558. TRN4556    Transposon Tn4556                            2       2       86
559. TRN5       Transposon Tn5                               9       6     4978
560. TRN501     Transposon Tn501                             4       4     7310
561. TRN554     Transposon Tn554                             5       1     6691
562. TRN7       Transposon Tn7                               7       7     7535
563. TRN9       Transposon Tn9                               2       2     1362
564. TRN903     Transposon Tn903                             6       6     6118
565. TRN916     Transposon Tn916                             1       1     1740
566. TRN917     Transposon Tn917                             3       3     6353
567. TRNCAM     Transposon Tn-Cam204                         1       1      921
568. TRP        Treponema pallidum                           7       6     8045
569. TTE        Thermoproteus tenax                          8       8     4399
570. TTH        Thermus aquaticus                            6       5     7004
571. TTH        Thermus caldophilus                          1       1     1229
572. TTH        Thermus flavus                               1       1     1771
573. TTH        Thermus thermophilus                        23      15    28221
574. TTV        Thermoproteus tenax virus 1                  2       1    13669
575. URE        Ureaplasma urealyticum                       2       2     3982
576. VCH        Vibrio cholerae                             17      15    18430
577. VI1        Plasmid pVI150                               1       1      972
578. VIB        Aeromonas hydrophila                         7       6     7237
579. VIB        Aeromonas sobria                             2       1     2510
580. VIB        Photobacterium leiognathi                    5       4    10047
581. VIB        Photobacterium sp.                           5       5     8715
582. VIB        Vibrio alginolyticus                         5       4    12901
583. VIB        Vibrio anguillarum                           1       1     4379
584. VIB        Vibrio fischeri                              4       4     5791
585. VIB        Vibrio harveyi                              12      11    14283
586. VIB        Vibrio parahaemolyticus                      2       2     2861
587. VIB        Vibrio sp.                                   3       2     1390
588. VIT        Vitreoscilla sp.                             2       1      689
589. VIT        Vitreoscilla stercoraria                     1       1      745
590. VVU        Vibrio vulnificus                            1       1     2237
591. W10        Plasmid pWR100                               2       1     4761
592. WOL        Wolinella succinogenes                       1       1       91
593. WP1        Plasmid pWP113a                              1       1     1316
594. WP1        Plasmid pWP116a                              1       1     1336
595. WP1        Plasmid pWP14a                               1       1     1336
596. XAA        Xanthobacter autotrophicus                   1       1     3041
597. XAN        Xanthomonas campestris                       3       3     4683
598. XEN        Xenorhabdus luminescens                      1       1     2553
599. YEP        Plasmid pYV03                                2       1     3316
600. YEP        Yersinia bercovieri                          2       2      257
601. YEP        Yersinia enterocolitica                     26      24    18913
602. YEP        Yersinia pestis                              4       4     4462
603. YEP        Yersinia pseudotuberculosis                 10       8    15439
604. ZMO        Zymomonas mobilis                            9       8    13565

     Total                                                5528    4293  6992664

STRUCTURAL RNA

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. AAU        Auricularia auricula-judae                   1       1      118
  2. ABC        Acetobacter sp.                              2       2      236
  3. ACA        Acanthamoeba castellanii                     3       3      400
  4. ACC        Acinetobacter calcoaceticus                  2       2     1652
  5. ACH        Achromobacter cycloclastes                   1       1      120
  6. ACH        Achromobacter xylosoxidans                   1       1      114
  7. ACL        Acholeplasma entomophilum                    1       1     1476
  8. ACL        Acholeplasma modicum                         1       1     1473
  9. ACN        Actinobacillus actinomycetemcomitans         3       3      494
 10. ACN        Actinobacillus equuli                        2       2      445
 11. ACN        Actinobacillus hominis                       3       3      494
 12. ACN        Actinobacillus lignieresii                   3       3     1931
 13. ACS        Avian sarcoma virus                          1       1       75
 14. ACY        Actinomyces bovis                            1       1     1368
 15. ACY        Actinomyces israelii                         2       2     1879
 16. ACY        Actinomyces naeslundii                       1       1     1378
 17. ACY        Actinomyces odontolyticus                    1       1     1359
 18. ACY        Actinomyces pyogenes                         2       1     1361
 19. ACY        Actinomyces viscosus                         1       1     1351
 20. AED        Agaricus edulis                              1       1      118
 21. AEQ        Actinia equina                               2       1      120
 22. AFA        Alcaligenes eutrophus                        1       1     1511
 23. AFA        Alcaligenes faecalis                         6       6     3410
 24. AKK        Akkesiphycus lubricum                        2       1      118
 25. ALF        Medicago sativa                              1       1      119
 26. ALL        Asteroleplasma anaerobium                    1       1     1471
 27. ALR        Rous sarcoma virus                           1       1       75
 28. AMG        Acyrthosiphon magnoliae                      2       2      281
 29. AMO        Amoebidium parasiticum                       1       1      119
 30. AMP        Amoeba proteus                               1       1      419
 31. ANC        Ancylobacter aquaticus                       1       1      117
 32. ANI        Anacystis nidulans                           4       4      371
 33. ANM        Anisodoris nobilis                           6       3      994
 34. ANP        Anaeroplasma abactoclasticum                 1       1     1453
 35. ANP        Anaeroplasma bactoclasticum                  1       1     1436
 36. ANP        Anaeroplasma varium                          1       1     1436
 37. APE        Acremonium persicinum                        1       1      119
 38. APL        Aplysia kurodai                              1       1      119
 39. APN        Anthoceros punctatus                         1       1      118
 40. APR        Antheraea pernyi                             1       1      120
 41. APU        Aeromonas punctata                           1       1      109
 42. AQU        Agmenellum quadruplicatum                    1       1       76
 43. ARB        Arbacia punctulata                           9       3     1049
 44. ARG        Arthrobacter globiformis                     4       3     1774
 45. ARG        Arthrobacter luteus                          1       1      122
 46. ARG        Arthrobacter oxidans                         2       1      121
 47. ARG        Arthrobacter sp.                             2       1      121
 48. ARN        Argulus nobilis                              1       1     1843
 49. ARO        Arhodomonas oleiferhydrans                   1       1     1487
 50. ARU        Arundinaria gigantea                         1       1       50
 51. ASC        Acinetospora crinita                         2       1      118
 52. ASE        Aquaspirillum serpens                        1       1      116
 53. ASF        Aspergillus flavus                           1       1      119
 54. ASG        Aspergillus niger                            1       1      119
 55. ASN        Aspergillus nidulans                         4       4      476
 56. AST        Avena sativa                                 1       1       50
 57. ATT        Atractiella solani                           1       1      119
 58. ATU        Agrobacterium tumefaciens                    1       1      120
 59. AUT        Aureobacterium testaceum                     1       1      120
 60. AVI        Azotobacter vinelandii                       1       1      120
 61. AXY        Amphibacillus xylanus                        2       1      116
 62. BAC        Bacillus acidocaldarius                      1       1      117
 63. BAE        Batrachospermum ectocarpum                   1       1      121
 64. BAS        Basidiobolus magnus                          1       1      120
 65. BBR        Bacillus brevis                              2       2     1674
 66. BDE        Bdellovibrio stolpii                         1       1     1553
 67. BEG        Beggiatoa alba                               1       1      120
 68. BFI        Bacillus firmus                              1       1      116
 69. BGA        Blue Green Algae                             1       1       76
 70. BGL        Bacillus globigii                            1       1      116
 71. BHA        Beneckea harveyi                             1       1      122
 72. BJA        Blepharisma japonicum                        2       2      476
 73. BLI        Bacillus licheniformis                       1       1      116
 74. BLK        Blakeslea trispora                           1       1      120
 75. BLT        Blastobacter viscosus                        1       1      118
 76. BLY        Hordeum vulgare                              9       7      487
 77. BME        Bacillus megaterium                          1       1      116
 78. BMO        Bombyx mori                                 14      13     1362
 79. BNA        Brassica napus                               2       2      196
 80. BNC        Bacteroides asaccharolyticus                 1       1       48
 81. BNG        Bacteroides gingivalis                       1       1       53
 82. BNI        Bacteroides intermedius                      1       1       52
 83. BNO        Bacteroides nodosus                          1       1     1532
 84. BOV        Bos taurus                                  21      18     1426
 85. BPA        Bacillus pasteurii                           1       1      117
 86. BPL        Brachionus plicatilis                        1       1      121
 87. BRA        Branchiostoma belcheri                       1       1      120
 88. BRA        Branchiostoma californiense                  6       3      974
 89. BRL        Brevibacterium helvolum                      2       1      120
 90. BRL        Brevibacterium linens                        1       1      123
 91. BRP        Brugia pahangi                               1       1      363
 92. BRU        Brucella abortus                             2       1     1429
 93. BSI        Blastocladiella simplex                      1       1      118
 94. BST        Bacillus stearothermophilus                 10      10      845
 95. BSU        Bacillus subtilis                           16      14     1153
 96. BVO        Bresslaua vorax                              1       1      120
 97. BVU        Beta vulgaris                                1       1      120
 98. CAI        Capniomyces stellatus                        1       1      121
 99. CAO        Carpopeltis crispata                         1       1      121
100. CAU        Caulobacter spinosum                         1       1      117
101. CBC        Caseobacter polymorphus                      1       1      121
102. CCI        Coprinus cinereus                            1       1      118
103. CCO        Crypthecodinium cohnii                       4       4      492
104. CDB        Cardiobacterium hominis                      1       1     1470
105. CEL        Caenorhabditis elegans                       9       7      713
106. CET        Ceratobasidium cornigerum                    1       1      118
107. CFI        Cellulomonas biazotea                        1       1      120
108. CHA        Chaetopterus sp.                             6       3      975
109. CHB        Chlorobium limicola                          2       2     1615
110. CHB        Chlorobium phaeobacteroides                  1       1      110
111. CHF        Chordaria flagelliformis                     2       1      118
112. CHH        Chaetomorpha moniligera                      1       1      120
113. CHK        Gallus gallus                               25      23     2774
114. CHL        Chlorella pyrenoidosa                        2       1      119
115. CHL        Chlorella sp.                                5       3     2082
116. CHO        Chilomonas paramecium                        1       1      124
117. CHR        Chromobacterium fluviatile                   1       1     1473
118. CHR        Chromobacterium violaceum                    1       1     1475
119. CHS        Christiansenia pallida                       1       1      120
120. CLL        Callinectes sapidus                          1       1     1861
121. CLM        Spisula solidissima                          6       3      937
122. CLO        Clostridium aminovalericum                   2       1     1554
123. CLO        Clostridium barkeri                          2       1     1527
124. CLO        Clostridium bifermentans                     1       1      117
125. CLO        Clostridium butyricum                        2       2      234
126. CLO        Clostridium carnis                           2       1      117
127. CLO        Clostridium pasteurianum                     4       3     1745
128. CLO        Clostridium ramosum                          1       1     1530
129. CLO        Clostridium sticklandii                      2       2     1501
130. CLO        Clostridium tyrobutyricum                    4       4      464
131. COE        Coemansia mojavensis                         1       1      120
132. COR        Corynebacterium aquaticum                    1       1      120
133. COR        Corynebacterium glutamicum                   1       1      121
134. COR        Corynebacterium sp.                          2       1     1366
135. COR        Corynebacterium xerosis                      2       2      243
136. COT        Gossypium hirsutum                           1       1      118
137. COX        Coxiella burnetii                            2       1     1484
138. CPA        Cyanophora paradoxa                          3       3      356
139. CRA        Coprinus radiatus                            1       1      118
140. CRB        Limulus polyphemus                           6       3      977
141. CRE        Chlamydomonas reinhardtii                    3       3      399
142. CRE        Chlamydomonas sp.                            1       1      118
143. CRS        Cryptochiton stelleri                        6       3      923
144. CTU        Coleosporium tussilaginis                    1       1      118
145. CUN        Cunninghamella elegans                       1       1      120
146. CUR        Curtobacterium citreum                       1       1      122
147. CVN        Chromatium vinosum                           1       1     1526
148. CYR        Cycas revoluta                               1       1      120
149. CYT        Cytophaga aquatilis                          1       1      111
150. CYT        Cytophaga heparina                           1       1      114
151. CYT        Cytophaga johnsonae                          1       1      116
152. DAC        Dryopteris acuminata                         1       1      121
153. DDE        Dacrymyces deliquescens                      1       1      118
154. DDI        Dictyostelium discoideum                     7       6     1170
155. DIT        Diatoma tenue                                1       1      118
156. DJA        Dugesia japonica                             1       1      120
157. DJA        Dugesia tigrina                              6       3      962
158. DOG        Canis lupus                                  1       1      149
159. DOG        Canis sp.                                    2       2      191
160. DPS        Dipsacomyces acuminosporus                   1       1      119
161. DRO        Drosophila melanogaster                     42      36     5318
162. DSA        Desulfuromonas acetoxidans                   1       1     1522
163. DSM        Desulfomonile tiedjei                        1       1     1505
164. DSP        Desulfobacter postgatei                      1       1     1519
165. DSV        Desulfosarcina variabilis                    1       1     1527
166. DUK        Cairina moschata                             1       1       78
167. DVU        Desulfovibrio vulgaris                       1       1      120
168. EAL        Enchytraeus albidus                          1       1      120
169. EAR        Equisetum arvense                            2       1      120
170. EBI        Eisenia bicyclis                             1       1      118
171. ECO        Escherichia coli                           148     116    14668
172. EFI        Efibulobasidium albescens                    1       1      118
173. EGR        Euglena gracilis                             4       4      391
174. EHP        Ectothiorhodospira halophila                 1       1     1494
175. EIK        Eikenella corrodens                          4       4     5933
176. EJA        Entosphenus japonicus                        2       2      241
177. EMP        Emplectonema gracile                         2       2      239
178. ERL        Erythrobacter longus                         1       1      119
179. ERP        Protomonas extorquens                        1       1      116
180. ERY        Erysipelothrix rhusiopathiae                 1       1     1487
181. ESE        Endophyllum sempervivi                       1       1      118
182. ESP        Euphausia sperba                             1       1       75
183. EUT        Eucidaris tribuloides                        6       3      923
184. EVA        Exobasidium vaccinii                         1       1      118
185. EWO        Euplotes woodruffi                           1       1      120
186. EXI        Exidia glandulosa                            1       1      118
187. FAE        Faenia rectivirgula                          1       1     1246
188. FBC        Flexibacter sp.                              1       1      117
189. FSB        Misgurnus fossilis                           3       3      399
190. FSB        Oncorhynchus keta                            1       1       75
191. FSB        Salmo gairdneri                              2       2      282
192. FSO        Fusarium culmorum                            2       2      387
193. FSO        Fusarium decemcellulare                      6       6     1161
194. FSO        Fusarium graminearum                         2       2      387
195. FSO        Fusarium javanicum                           4       4      768
196. FSO        Fusarium moniliforme                         6       6     1159
197. FSO        Fusarium nivale                              2       2      384
198. FSO        Fusarium oxysporum                           3       3     1010
199. FSO        Fusarium solani                              4       4      767
200. FVB        Flavobacterium sp.                           1       1      121
201. GBI        Ginkgo biloba                                1       1      120
202. GCL        Gymnosporangium clavariaeforme               1       1      118
203. GCO        Gracilaria compressa                         3       2      242
204. GEA        Gelidium amansii                             2       2      241
205. GEM        Gemmata obscuriglobus                        1       1      108
206. GEN        Genistelloides hibernus                      1       1      122
207. GLA        Giardia lamblia                              1       1      127
208. GLC        Gloiopeltis complanata                       1       1      120
209. GOL        Golfingia gouldii                            6       3      973
210. GRA        Graphiola phoenicis                          1       1      118
211. HAL        Halobacterium volcanii                      56      46     5074
212. HAM        Mesocricetus sp.                             2       1       94
213. HAP        Halichondria panicea                         1       1      120
214. HAZ        Haemophilus aphrophilus                      3       3      494
215. HCU        Halobacterium cutirubrum                    15      13     1050
216. HDI        Hymenolepis diminuta                         2       2      215
217. HEA        Haemophilus aegypticus                       1       1      116
218. HEI        Haemophilus influenzae                       3       3     1917
219. HJA        Halichondria japonica                        1       1      120
220. HLF        Haloferax mediterranei                       2       1      123
221. HMO        Halococcus morrhuae                          2       2      309
222. HOC        Haliclona oculata                            1       1      120
223. HPT        Herpetosiphon aurantiacus                    1       1      117
224. HRO        Halocynthia roretzi                          2       1      119
225. HSA        Hymeniacidon sanguinea                       2       2      276
226. HUM        Homo sapiens                                51      45     6394
227. HYD        Hydra sp.                                    6       3      966
228. HYF        Hydrurus foetidus                            1       1      118
229. HYV        Hyphomicrobium sp.                           1       1      119
230. HYV        Hyphomicrobium vulgare                       1       1      119
231. IGU        Iguana iguana                                1       1      120
232. ISO        Isosphaera pallida                           1       1      111
233. JLA        Aurelia aurita                               2       2      240
234. JLC        Chrysaora quinquecirrha                      1       1      120
235. JLN        Nemopsis dofleini                            1       1      120
236. JLS        Spirocodon saltatrix                         1       1      121
237. KAB        Kabatiella microsticta                       1       1      120
238. KIN        Kingella denitrificans                       1       1     1475
239. KIN        Kingella indologenes                         1       1     1474
240. KIN        Kingella kingae                              1       1     1476
241. LAE        Listonella aestuarianus                      1       1      119
242. LAN        Lingula anatina                              1       1      119
243. LAN        Lingula reevi                                6       3      919
244. LAP        Lamprometra palmata                          9       3     1044
245. LBK        Lactobacillus kandleri                       2       1     1528
246. LBM        Lactobacillus minor                          2       1     1524
247. LBR        Lactobacillus brevis                         1       1      117
248. LBT        Lactobacillus halotolerans                   2       1     1529
249. LCA        Lactobacillus casei                          2       1     1574
250. LCA        Lactobacillus catenaforme                    1       1     1549
251. LCO        Lactobacillus confusus                       2       1     1525
252. LEI        Leishmania enriettii                         1       1       68
253. LEU        Leuconostoc cremoris                         2       1     1493
254. LEU        Leuconostoc lactis                           2       1     1499
255. LEU        Leuconostoc mesenteroides                    2       1     1554
256. LEU        Leuconostoc oenos                            2       1     1510
257. LEU        Leuconostoc paramesenteroides                2       1     1524
258. LGE        Lineus geniculatus                           1       1      120
259. LHE        Lophocolea heterophylla                      1       1      119
260. LND        Linderina macrospora                         1       1      119
261. LPN        Fluoribacter bozemanae                       6       6      796
262. LPN        Fluoribacter dumoffii                        6       6      825
263. LPN        Fluoribacter gormanii                        3       3      385
264. LPN        Legionella pneumophila                      11      10     1252
265. LSY        Leptosynapta inhaerens                       6       3     1051
266. LTT        Leptothrix discophora                        1       1      117
267. LUM        Lumbricus sp.                                6       3      976
268. LUP        Lupinus luteus                               5       5      380
269. LVI        Lactobacillus viridescens                    4       3     1816
270. LVI        Lactobacillus vitulinus                      1       1     1477
271. LYC        Lycopodium clavatum                          1       1      121
272. LYO        Lycoperdon pyriforme                         1       1      118
273. MAG        Methylomonas agile                           1       1      119
274. MAG        Methylomonas methanica                       2       2     1400
275. MAG        Methylomonas rubra                           1       1      119
276. MBF        Methanobacterium formicicum                  1       1     1476
277. MBI        Methanobacterium thermoautotrophicum         4       4      415
278. MES        Methanosarcina barkeri                       1       1      130
279. MET        Metridium senile                             6       3      963
280. MGL        Metasequoia glyptostroboides                 1       1      120
281. MJU        Microstroma juglandis                        1       1      121
282. MLC        Methylococcus capsulatus                     3       3     1469
283. MLM        Moloney murine leukemia virus                1       1       74
284. MLU        Micrococcus luteus                           2       2      238
285. MLY        Micrococcus lysodeikticus                    1       1      120
286. MNI        Mnium rugicum                                2       1      157
287. MOR        Mortierella formosensis                      1       1      120
288. MPO        Marchantia polymorpha                        1       1      119
289. MSE        Megasphaera elsdenii                         1       1     1567
290. MSG        Mycobacterium asiaticum                      2       1     1368
291. MSG        Mycobacterium aurum                          2       1     1349
292. MSG        Mycobacterium avium                          4       2     2735
293. MSG        Mycobacterium chelonei                       2       1     1355
294. MSG        Mycobacterium chitae                         2       1     1359
295. MSG        Mycobacterium fallax                         2       1     1348
296. MSG        Mycobacterium flavescens                     2       1     1357
297. MSG        Mycobacterium gordonae                       2       1     1373
298. MSG        Mycobacterium kansasii                       2       1     1369
299. MSG        Mycobacterium leprae                         1       1      313
300. MSG        Mycobacterium neoaurum                       2       1     1354
301. MSG        Mycobacterium nonchromogenicum               2       1     1376
302. MSG        Mycobacterium paratuberculosis               2       1     1367
303. MSG        Mycobacterium phlei                          2       1     1357
304. MSG        Mycobacterium senegalense                    2       1     1356
305. MSG        Mycobacterium smegmatis                      1       1       77
306. MSG        Mycobacterium sp.                            4       2     2715
307. MSG        Mycobacterium terrae                         2       1     1363
308. MSG        Mycobacterium thermoresistible               2       1     1359
309. MSG        Mycobacterium triviale                       2       1     1351
310. MSG        Mycobacterium tuberculosis                   1       1      116
311. MSL        Mytilus edulis                               1       1      119
312. MTB        Methylobacterium extorquens                  2       2     1471
313. MTB        Methylobacterium organophilum                2       2     1431
314. MTB        Methylobacterium sp.                         1       1     1052
315. MTE        Methylosporovibrio methanica                 1       1     1306
316. MUS        Mus musculus                                40      40     4555
317. MYA        Mya arenaria                                 6       3      927
318. MYC        Mycoplasma capricolum                        3       3      259
319. MYC        Mycoplasma hyopneumoniae                     3       3     1799
320. MYC        Mycoplasma mycoides                          7       6     1885
321. MYC        Mycoplasma sp.                              24      24    34006
322. MYL        Methylosinus trichosporium                   2       2     1575
323. MYM        Methylophilus methylotrophus                 2       2     1619
324. MYP        Methylocystis parvus                         2       2     1433
325. MZE        Zea mays                                     1       1       50
326. NDU        Nematospiroides dubius                       1       1      360
327. NEC        Nectria haematococca                         6       6     1152
328. NEM        Ascaris suum                                22      22     1251
329. NEU        Neurospora crassa                            6       6     1100
330. NGO        Neisseria denitrificans                      1       1     1478
331. NGO        Neisseria gonorrhoeae                        1       1     1486
332. NIF        Nitella flexilis                             1       1      121
333. NIT        Nitrobacter winogradskyi                     1       1      117
334. OCE        Oceanospirillum linum                        1       1     1542
335. ONG        Onchocerca gibsoni                           1       1      363
336. OPW        Ophiocoma wendtii                            9       3     1036
337. PAE        Palaemonetes kadiakensis                     1       1     1877
338. PAR        Paramecium caudatum                          1       1      366
339. PAR        Paramecium primaurelia                       1       1      366
340. PAR        Paramecium tetraurelia                       1       1      120
341. PAS        Pasteurella multocida                        3       3     1926
342. PBL        Phycomyces blakesleeanus                     1       1      120
343. PBR        Perinereis brevicirris                       1       1      120
344. PCL        Prochloron sp.                               1       1      122
345. PCR        Philosamia cynthia ricini                    2       2      289
346. PDE        Paracoccus denitrificans                     1       1      117
347. PEA        Pisum sativum                                8       8      824
348. PEC        Penicillium chrysogenum                      1       1      119
349. PEP        Penicillium patulum                          1       1      119
350. PEU        Penaeus aztecus                              1       1     1902
351. PFA        Plasmodium falciparum                        1       1       78
352. PGO        Phascolopsis gouldii                         1       1      120
353. PHS        Phasianus colchicus                          1       1       95
354. PHV        Phaseolus vulgaris                           1       1       75
355. PHY        Pythium hydnosporum                          1       1      118
356. PIL        Pilayella littoralis                         1       1      118
357. PIR        Phlyctochytrium irregulare                   1       1      118
358. PIS        Pimelobacter simplex                         1       1      120
359. PIV        Pivellula marina                             2       1     2885
360. PLA        Platygloea peniophorae                       1       1      119
361. PLC        Planococcus citreus                          2       1      116
362. PLC        Planococcus kocurii                          2       1      116
363. PLE        Phleogena faginea                            1       1      119
364. PLL        Pirella marina                               1       1      110
365. PLL        Pirella sp.                                  2       2      222
366. PLT        Planctomyces brasiliensis                    1       1      110
367. PLT        Planctomyces limnophilus                     1       1      111
368. PLT        Planctomyces staleyi                         1       1     1525
369. PMC        Pneumocystis carinii                         1       1      120
370. PMI        Prorocentrum micans                          1       1      364
371. PNC        Pseudonocardia thermophila                   1       1     1246
372. PNU        Psilotum nudum                               2       2      171
373. POC        Procaris ascensionis                         1       1     1874
374. POO        Prosthecochloris aestuarii                   1       1      110
375. POR        Porocephalus crotali                         1       1     1830
376. POS        Pleurotus ostreatus                          1       1      118
377. PPO        Puccinia poarum                              1       1      118
378. PRA        Procambarus leonensis                        1       1     1869
379. PRE        Planocera reticulata                         1       1      120
380. PRM        Proteus vulgaris                             4       4     1925
381. PSE        Pseudomonas aeruginosa                       2       2     1637
382. PSE        Pseudomonas cepacia                          2       2     1589
383. PSE        Pseudomonas fluorescens                      2       1      120
384. PSE        Pseudomonas sp.                              1       1      118
385. PT4        Bacteriophage T4                            17      12      979
386. PT5        Bacteriophage T5                             9       9      711
387. PTE        Porphyra tenera                              1       1      121
388. PTR        Plagiomnium trichomanes                      1       1      119
389. PYE        Porphyra yezoensis                           1       1      121
390. QUL        Coturnix coturnix                            1       1      136
391. RAB        Oryctolagus cuniculus                       15      11     4955
392. RAT        Rattus norvegicus                           60      45     6084
393. RAT        Rattus rattus                                4       4      230
394. RCA        Rhodobacter capsulatus                       2       2      235
395. RCY        Russula cyanoxantha                          1       1      119
396. REC        Renobacter vacuolatum                        1       1      116
397. RER        Rhodococcus equi                             2       1     1360
398. RER        Rhodococcus erythropolis                     1       1      121
399. RHC        Rhizoctonia crocorum                         1       1      119
400. RHZ        Rhizoctonia hiemalis                         1       1      119
401. RIC        Oryza sativa                                 2       2      417
402. RIF        Riftia pachyptila                            6       3      929
403. RIR        Rickettsia rickettsii                        2       1     1443
404. RIR        Rickettsia typhi                             2       1     1444
405. RMA        Rhodopseudomonas marina                      1       1     1417
406. RPA        Rhodopseudomonas palustris                   1       1      119
407. RRU        Rhodospirillum rubrum                        2       2      161
408. RSP        Rhodospirillum rubrum                        1       1     1446
409. RSS        Rhodobacter sphaeroides                      1       1      115
410. RTO        Rhabditis tokai                              1       1      119
411. RYE        Secale cereale                               3       3      356
412. SAC        Sulfolobus acidocaldarius                    2       2      204
413. SAG        Schizochytrium aggregatum                    1       1      119
414. SAH        Saccharum officinarum                        1       1       50
415. SAU        Stigmatella aurantiaca                       2       2      239
416. SCC        Scyliorhinus caniculus                       1       1      120
417. SCL        Styela clava                                 6       3      967
418. SCM        Schistosoma mansoni                          2       2      215
419. SCS        Saccharopolyspora hirsuta                    1       1     1284
420. SCU        Thyone briareus                              6       3     1059
421. SEP        Septobasidium carestianum                    1       1      119
422. SFE        Saprolegnia ferax                            1       1      118
423. SFU        Sargassum fulvellum                          1       1      118
424. SHE        Shewanella hanedai                           2       1      120
425. SHP        Ovis sp.                                     1       1       76
426. SHR        Artemia salina                               2       2      282
427. SJA        Sabellastarte japonica                       1       1      120
428. SLI        Synechococcus lividus                        1       1      120
429. SLM        Physarum polycephalum                        6       5      845
430. SME        Spiroplasma sp.                             11      11    14826
431. SMI        Smittium culisetae                           1       1      121
432. SNL        Arion rufus                                  3       2      276
433. SNL        Helix pomatia                                1       1      119
434. SOB        Scenedesmus obliquus                         5       5      407
435. SOF        Sepia officinalis                            2       1      120
436. SOS        Stichopus oshimae                            1       1      120
437. SPG        Saprospira grandis                           1       1      121
438. SPI        Spinacia oleracea                            3       2      205
439. SPL        Spirillum volutans                           1       1     1492
440. SPM        Spirobolus marginatus                        6       3      977
441. SPO        Sporolactobacillus inulinus                  1       1      117
442. SPS        Spirogyra sp.                                1       1      120
443. SQD        Illex illecebrosus                           1       1      120
444. SRG        Sorghum bicolor                              1       1       50
445. SSO        Sulfolobus solfataricus                      1       1      126
446. SSP        Sulfolobus sp.                               1       1      131
447. STA        Staphylococcus aureus                        1       1      115
448. STA        Staphylococcus epidermidis                   5       3      264
449. STC        Stentor coeruleus                            1       1      353
450. STE        Stella humosa                                1       1      117
451. STF        Asteria amurensis                            2       2      195
452. STF        Asterias forbesi                             9       3     1045
453. STF        Asterina pectinifera                         1       1      120
454. STM        Streptomyces griseus                         1       1      120
455. STN        Stenopus hispidus                            1       1     1885
456. STR        Streptococcus cremoris                       1       1      117
457. STR        Streptococcus faecalis                       1       1      117
458. STR        Streptococcus sp.                            1       1     1577
459. STY        Salmonella typhimurium                       7       6      459
460. SUD        Pseudocentrotus depressus                    1       1      120
461. SUE        Heliocidaris erythrogramma                   6       3     1043
462. SUE        Heliocidaris tuberculata                     6       3      910
463. SUH        Hemicentrotus pulcherrimus                   1       1      120
464. SUL        Lytechinus pictus                            6       3     1046
465. SUP        Psammechinus miliaris                        8       8      422
466. SUS        Strongylocentrotus purpuratus                6       3      988
467. SYB        Syntrophospora bryantii                      1       1     1532
468. SYC        Synechocystis sp.                            1       1       76
469. SYN        Synechococcus lividus                        1       1      119
470. SYW        Syntrophomonas wolfei                        1       1     1532
471. TAM        Tatlockia maceachernii                       3       3      458
472. TAM        Tatlockia micdadei                           9       9     1286
473. TAN        Tilletiaria anomala                          1       1      118
474. TAP        Taphrina deformans                           1       1      119
475. TCO        Tilletiaria controversa                      1       1      118
476. TET        Tetrahymena thermophila                      7       7      615
477. TEY        Tetrahymena pyriformis                       3       3      623
478. TFE        Acidiphilium cryptum                         1       1      122
479. TFE        Thiobacillus acidophilus                     1       1      120
480. TFE        Thiobacillus ferrooxidans                    2       2      240
481. TFE        Thiobacillus intermedius                     1       1      117
482. TFE        Thiobacillus neapolitanus                    1       1      119
483. TFE        Thiobacillus novellus                        1       1      120
484. TFE        Thiobacillus perometabolis                   1       1      116
485. TFE        Thiobacillus sp.                             1       1      117
486. TFE        Thiobacillus thiooxidans                     1       1      121
487. TFE        Thiobacillus thioparus                       1       1      118
488. TFE        Thiobacillus versutus                        1       1      116
489. TFE        Thiomicrospira pelophila                     1       1      118
490. TFE        Thiomicrospira sp.                           1       1      117
491. THA        Artificial gene                              3       3      276
492. THC        Thermococcus celer                           2       2     1611
493. THR        Thermomicrobium roseum                       1       1      127
494. THT        Thiothrix nivea                              1       1      122
495. THT        Thiothrix sp.                                1       1      120
496. THV        Thiovulum sp.                                1       1      123
497. TLA        Thermomyces lanuginosus                      2       2      276
498. TLP        Torulopsis utilis                            1       1      121
499. TOB        Nicotiana tabacum                            2       2      152
500. TOR        Trichosporon oryzae                          1       1      118
501. TRB        Trypanosoma brucei                           2       2      106
502. TRD        Tripsacum dactyloides                        1       1       50
503. TRF        Crithidia fasciculata                        7       7     1305
504. TRI        Trichomonas vaginalis                        1       1      341
505. TTE        Thermoproteus tenax                          1       1     1504
506. TTH        Thermus aquaticus                            2       2      243
507. TTH        Thermus sp.                                  2       2      243
508. TTH        Thermus thermophilus                         5       4      354
509. TUL        Tulasnella violea                            1       1      118
510. TUM        Tuberoidobacter mutans                       1       1      116
511. TVI        Thraustochytrium visurgense                  1       1      119
512. UPE        Ulva pertusa                                 1       1      120
513. URE        Ureaplasma urealyticum                       1       1     1464
514. UTH        Uthatobasidium fusisporum                    1       1      118
515. UUN        Urechis unicinctus                           1       1      120
516. VCH        Vibrio cholerae                              1       1      119
517. VER        Verrucomicrobium spinosum                    1       1      116
518. VFA        Vicia faba                                   2       2      327
519. VIB        Aeromonas hydrophila                         1       1      118
520. VIB        Aeromonas media                              1       1      119
521. VIB        Aeromonas salmonicida                        1       1      119
522. VIB        Alteromonas colwelliana                      2       1      120
523. VIB        Alteromonas putrifaciens                     1       1      120
524. VIB        Photobacterium angustum                      1       1      120
525. VIB        Photobacterium leiognathi                    1       1      120
526. VIB        Photobacterium sp.                           1       1      120
527. VIB        Plesiomonas shigelloides                     1       1      120
528. VIB        Vibrio alginolyticus                         1       1      121
529. VIB        Vibrio anguillarum                           1       1      120
530. VIB        Vibrio carchariae                            1       1      120
531. VIB        Vibrio cincinnatii                           1       1      120
532. VIB        Vibrio damsela                               1       1      120
533. VIB        Vibrio fischeri                              1       1      120
534. VIB        Vibrio fluvialis                             2       2      240
535. VIB        Vibrio gazogenes                             1       1      120
536. VIB        Vibrio logei                                 1       1      120
537. VIB        Vibrio marinus                               2       2      236
538. VIB        Vibrio metschnitovii                         1       1      120
539. VIB        Vibrio mimicus                               1       1      120
540. VIB        Vibrio natriegens                            1       1      121
541. VIB        Vibrio nereis                                2       1      121
542. VIB        Vibrio parahaemolyticus                      2       2      239
543. VIB        Vibrio pelagius                              1       1      120
544. VIB        Vibrio proteolyticus                         1       1      120
545. VIB        Vibrio psychroerythus                        1       1      119
546. VIB        Vibrio sp.                                   5       4      478
547. VIT        Vitreoscilla sp.                             2       2      234
548. VIT        Vitreoscilla stercoraria                     2       2     1608
549. VVU        Vibrio vulnificus                            1       1      120
550. WHT        Triticum aestivum                           17      14     1729
551. WHT        Triticum sp.                                 2       2      152
552. WHT        Triticum vulgare                             2       2      282
553. WLB        Wolbachia persica                            2       1     1475
554. WOL        Wolinella succinogenes                       1       1     1503
555. XEB        Xenopus borealis                             3       3      477
556. XEL        Xenopus laevis                              20      17     4158
557. XET        Xenopus tropicalis                           2       2      242
558. XYL        Xylella fastidiosa                           1       1     1493
559. YSA        Candida albicans                             1       1      121
560. YSC        Saccharomyces cerevisiae                    62      47     4920
561. YSG        Saccharomyces carlsbergensis                 4       2      242
562. YSK        Kluyveromyces lactis                         1       1      121
563. YSP        Schizosaccharomyces pombe                    8       8      630
564. YSR        Pichia membranaefaciens                      1       1      120
565. YST        Yeast sp.                                    7       6      492
566. YSU        Candida utilis                              12      10      815
567.            Unidentified                               177     169    19082

     Total                                                1946    1647   445723

VIRAL

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. AA2        Adeno associated virus                       9       6     7879
  2. AAF        Avian musculoaponeurotic fibrosarcoma virus
                                                             2       1     3171
  3. AC2        Avian carcinoma virus                       14      11    18641
  4. ACB        Avian erythroblastosis virus                19      15    18700
  5. ACE        Avian endogenous virus                       5       5     2772
  6. ACF        Fujinami sarcoma virus                       3       2     7503
  7. ACM        Avian myelocytomatosis retrovirus           10       8    11975
  8. ACR        Avian reticuloendotheliosis virus           12       8     8401
  9. ACS        Avian sarcoma virus                         15      13    16357
 10. AD4        Mastadenovirus h40                           4       4    10795
 11. AD4        Mastadenovirus h41                           3       3     8920
 12. ADA        Mastadenovirus s30                           5       5     1318
 13. ADB        Mastadenovirus 2                            82       5    36399
 14. ADB        Mastadenovirus c2                            1       1      196
 15. ADC        Mastadenovirus h3                           12      11     9026
 16. ADD        Mastadenovirus h4                            7       5     5078
 17. ADE        Mastadenovirus 7                             1       1     2718
 18. ADE        Mastadenovirus h5                           35      11    30276
 19. ADG        Mastadenovirus h7                           15       6    13245
 20. ADG        Mastadenovirus s7                            6       5     4931
 21. ADI        Mastadenovirus 9                             2       2      332
 22. ADJ        Mastadenovirus 10                            1       1      135
 23. ADL        Mastadenovirus 2                             2       1      430
 24. ADL        Mastadenovirus h12                          41      23    19901
 25. ADR        Mastadenovirus 18                            2       2      364
 26. ADT        Tupaia adenovirus                            4       4     3784
 27. ADU        Mastadenovirus 19                            1       1      154
 28. ADV        Adenovirus VA                                8       7    11146
 29. ADV        Mastadenovirus                               2       2     1549
 30. ADV        Mastadenovirus h40                           1       1     1849
 31. ADV        Mastadenovirus h41                           2       1     1939
 32. ADX        Mastadenovirus bos1                          1       1      159
 33. ADX        Mastadenovirus mus                           7       5     9449
 34. ADY        Eggdrop syndrome-1976 virus                  1       1       52
 35. ADZ        Mastadenovirus 31                            2       2      300
 36. ADZ        Mastadenovirus bos3                          1       1     2849
 37. ADZ        Mastadenovirus c2                            2       2     3689
 38. AEA        Avian adenovirus                             3       3      576
 39. AEC        Canine adenovirus                            4       4      805
 40. AEE        Equine adenovirus                            4       4      617
 41. AIN        Aino virus                                   1       1      850
 42. ALE        Rous associated virus                        9       8     5119
 43. ALK        Avian leukemia virus                         2       2      454
 44. ALM        Avian myeloblastosis virus                   6       6     6465
 45. ALR        Rous sarcoma virus                         162     136    65936
 46. ALV        Avian leukosis virus                        12      12     5400
 47. APH        Foot and mouth disease virus               125     120    77985
 48. ARE        Avian retrovirus                             2       2      698
 49. ARE        Avian retrovirus IC10                        3       2     6013
 50. ARR        Adult diarrhea rotavirus                     2       2     1445
 51. ASB        Avocado sunblotch viroid                    20      19     4715
 52. ASS        Apple scar skin viroid                       1       1      329
 53. ASV        African swine fever virus                    4       3     6376
 54. BBM        Broad bean mottle virus                      3       3      680
 55. BBV        Black beetle virus                           4       3     4893
 56. BCT        Beet curly top virus                         1       1     2993
 57. BEC        Bovine enteritic coronavirus                 1       1     1710
 58. BEV        Bovine enterovirus                           1       1     7414
 59. BIM        Bovine immunodeficiency-like virus           1       1     8482
 60. BLC        Bunyamwera virus                             3       3    12294
 61. BLC        Bunyavirus La Crosse                        19      18     9070
 62. BLC        Germiston bunyavirus                         2       2     5514
 63. BLV        Bovine leukemia virus                       20      20    31133
 64. BNY        Beet necrotic yellow vein mosaic virus       6       6    17031
 65. BOO        Boolarra virus                               2       1     1305
 66. BRV        Berne virus                                  2       2      376
 67. BTV        Bluetongue virus                            31      23    43490
 68. BVD        Bovine viral diarrhea virus                  1       1    12573
 69. BWY        Beet western yellow virus                    5       3     7958
 70. BYD        Barley yellow dwarf virus                    3       2     6280
 71. CAD        Canine distemper virus                       4       4     6857
 72. CAN        Carnation etched ring virus                  1       1     7932
 73. CAP        Capripoxvirus                                4       4    10417
 74. CAS        Cassava latent virus                         2       2     5503
 75. CASNS      Cas NS1 retrovirus                           1       1     2711
 76. CBV        Choristoneura biennis virus                  1       1     1173
 77. CCC        Cadang-cadang coconut viroid                 3       3      779
 78. CCP        Cricket paralysis virus                      1       1     1594
 79. CEA        Caprine arthritis encephalitis virus         9       8    11854
 80. CEV        Citrus exocortis viroid                      4       4     1484
 81. CFD        Coconut foliar decay virus                   1       1     1291
 82. CHM        Chloris striate mosaic virus                 1       1     2750
 83. CHV        Chlorella virus                              2       2     3727
 84. CMV        Carnation mottle virus                       1       1     4003
 85. CNV        Cucumber necrosis virus                      1       1     4701
 86. CO4        Coliphage N4                                 2       2     1759
 87. COB        Bovine coronavirus                           8       5    15070
 88. CPB        Chlorella PBCV-1 virus                       1       1     4265
 89. CPE        Euxoa scandens cytoplasmic polyhedrosis virus
                                                             1       1      882
 90. CPF        Cucumber pale fruit viroid                   3       2      604
 91. CPR        Chandipura virus                             1       1     1751
 92. CPV        Cowpox virus                                20      20    17648
 93. CRV        Cymbidium ringspot virus                     2       1     4733
 94. CSO        Campoletis sonorensis virus                  8       6     9418
 95. CSV        Chrysanthemum stunt viroid                   4       3     1040
 96. CTN        Coconut tinangaja viroid                     1       1      254
 97. CXB        Coxsackievirus B1                            2       2     8844
 98. CXB        Coxsackievirus B3                            5       5    20481
 99. CXB        Coxsackievirus B4                            1       1     7395
100. CYM        Clover yellow mosaic potexvirus              1       1     1051
101. CYS        Lymphocystis disease virus of fish           3       3     5310
102. DEN        Dengue virus                               105     103    90462
103. DHV        Dhori virus                                  1       1     1479
104. DMB        Thymotropic retrovirus type B                1       1      285
105. DNV        Densonucleosis virus                         1       1     4277
106. DPF        Dapple peach fruit disease viroid            1       1      297
107. DPP        Dapple plum and peach fruit disease viroid
                                                             1       1      297
108. DUG        Dugbe nairovirus                             1       1     1712
109. EAE        Equine arthritis encephalitis virus          1       1     2580
110. EBO        Ebola virus                                  2       2     3178
111. ECV        Echo 11 virus                                1       1       98
112. ECV        Echo 6 virus                                 1       1       99
113. ECV        Echo 9 virus                                 2       2      615
114. EEE        Eastern equine encephalomyelitis virus       5       5     5163
115. EEV        Venezuelan equine encephalitis virus         7       6     8300
116. EEW        Western equine encephalitis virus            2       2     4521
117. EIA        Equine infectious anemia virus              18      11    24136
118. EMC        Encephalomyocarditis virus                  10       9    27249
119. FCG        Gardner-Arnstein Feline Leukemia oncovirus B
                                                             2       2     3863
120. FCL        Feline calicivirus                           2       2     6358
121. FCR        RD114 retrovirus                             1       1      126
122. FCS        Feline sarcoma virus                         7       7    14248
123. FCV        Feline leukemia virus                       17      15    38510
124. FHV        Flock house virus                            2       1     1400
125. FIP        Feline infectious peritonitis virus          1       1     4500
126. FIV        Feline immunodeficiency virus                6       3    19318
127. FLA        Influenza virus type A                     504     412   430270
128. FLB        Influenza virus type B                      85      72   102701
129. FLC        Influenza virus type C                      29      29    46959
130. FMV        Figwort mosaic virus                         1       1     7743
131. FPV        Fowlpox virus                                6       6    25819
132. FV3        Frog virus 3                                 3       2     2273
133. GPB        Granulosis virus                             1       1      999
134. GPR        Gottfried porcine rotavirus                  1       1     3302
135. GSB        GS virus                                     1       1      307
136. GSH        Ground squirrel hepatitis virus              1       1     3311
137. GVI        Grapevine chrome mosaic virus                4       2    11653
138. GVI        Grapevine viroid                             3       2      665
139. GVT        Trichoplusia ni granulosis virus             1       1      998
140. GYS        Grapevine yellow speckle viroid              3       2      730
141. HAN        Hantaan virus                                6       5     9735
142. HBD        Duck hepatitis B virus                       6       5    12249
143. HBH        Heron hepatitis B virus                      1       1     3027
144. HCV        Hog cholera virus                            3       2    24567
145. HIV        Human immunodeficiency virus type 1        101      53   187276
146. HIV        Human immunodeficiency virus type 2         13       9    75733
147. HIV        Human lymphotropic virus type III            1       1      261
148. HIV        Human T-cell lymphotropic virus type II      7       3    10520
149. HJV        Highlands J virus                            2       2      505
150. HL1        Human lymphotropic virus type I             15      13    26925
151. HL2        Human lymphotropic virus type II             4       4     5400
152. HLV        Hop latent viroid                            2       1      256
153. HOB        Human coronavirus                            4       3     3550
154. HOJ        HoJo virus                                   1       1     3613
155. HOM        Mus hortulanus virus                         3       3     4668
156. HOP        Hop Stunt Viroid                            10       7     2094
157. HPA        Hepatitis A virus                           13      11    42881
158. HPB        Hepatitis B virus                           74      70    76139
159. HPC        Hepatitis C virus                            3       2     7893
160. HPD        Hepatitis delta virus                        4       3     3523
161. HPE        Hepatitis E virus                            2       1     2570
162. HPU        Duck hepatitis virus                         2       1     3021
163. HPV        Hepatitis virus                              2       2     4553
164. HRD        Human retrovirus type D                      1       1     8785
165. HRV        Human rhinovirus                            11       9    31251
166. HS1        Herpes simplex virus type 1                148     109   315961
167. HS2        Herpes simplex virus type 2                 37      31    54029
168. HS4        Epstein-Barr virus                          88      68   310429
169. HS5        Human cytomegalovirus                       44      40   136382
170. HS5        Murine cytomegalovirus                       4       3     6921
171. HS5        Simian cytomegalovirus                       1       1      880
172. HS6        Human herpesvirus type 6                     2       2    26298
173. HSB        Bovine herpesvirus type 1                    9       9     8227
174. HSC        Simian cytomegalovirus                       2       2     2294
175. HSE        Equine herpesvirus type 1                   19      17    45132
176. HSG        Gallid herpesvirus type 1                    5       5    10607
177. HSK        Gallid herpesvirus type 2                    4       4    11325
178. HSL        Feline herpesvirus                           1       1     1619
179. HSL        Herpesvirus ateles                           1       1     2577
180. HSM        Gallid herpesvirus type 1                    2       2     3367
181. HSO        Herpesvirus papio                            2       2      806
182. HSP        Human spumaretrovirus                        3       3    12095
183. HSS        Herpesvirus saimiri                         30      29    22133
184. HSS        Pseudorabies virus                          18      14    38325
185. HST        Herpesvirus tamarinus                        2       1     2556
186. HSU        Herpesvirus tupaia                           1       1      863
187. HSV        Herpes simplex virus                         1       1      501
188. HSY        Herpesvirus sylvilagus                       1       1      559
189. HTV        Human adult T-cell leukemia virus            3       2     3556
190. IBA        Avian infectious bronchitis virus           24      24    31163
191. IBB        Infectious bronchitis virus                  3       2     7215
192. IBD        Infectious bursal disease virus of chickens
                                                             4       3     9138
193. IHN        Infectious hematopoietic necrosis virus      2       2     2961
194. INS        Insect iridescent virus type 22              1       1     2183
195. IPN        Infectious pancreatic necrosis virus         2       1     3097
196. IRI        Iridescent virus type 1                      1       1     2461
197. IRI        Iridescent virus type 6                      3       3    10327
198. JEV        Japanese encephalitis virus                  4       4    18496
199. KUN        Kunjin virus                                 1       1    10664
200. KVS        Killer virus of S.cerevisiae                 8       6     1872
201. LCV        Lymphocytic choriomeningitis virus          11      11    19716
202. LDV        Lactate dehydrogenase-elevating virus        6       6     1684
203. LEE        Lee virus                                    1       1     3616
204. LSV        Lassa virus                                  4       4    10307
205. MAA        Alfalfa mosaic virus                        28      19    15793
206. MAV        Myeloblastosis-associated virus              1       1     1173
207. MBG        Bean golden mosaic virus                     4       4    10465
208. MBG        Bean yellow mosaic virus                     1       1     1015
209. MBR        Brome mosaic virus                          16      12     9903
210. MBS        Barley stripe mosaic virus                  11       8    13655
211. MBV        Middleburg virus                             4       3     3394
212. MCA        Cauliflower mosaic virus                    28      25    41207
213. MCC        Cowpea chlorotic mottle virus                7       6     6379
214. MCF        Mink cell focus-forming virus                8       8     8202
215. MCG        Cucumber green mottle mosaic virus           2       2     2421
216. MCM        Maize chlorotic mottle virus                 2       1     4437
217. MCP        Cowpea mosaic virus                          8       8    10170
218. MCV        Cucumber mosaic virus                       53      52    34142
219. MDP        Aleutian mink disease parvovirus             4       2     8255
220. MEA        Measles virus                               30      25    83843
221. MEV        Maus-Elberfeld virus                         1       1       54
222. MGR        Maguari bunyavirus                           1       1      945
223. MHV        Murine hepatitis virus                      39      33    39489
224. MLA        Abelson murine leukemia virus                8       6    10848
225. MLE        Mouse RFV endogenous retrovirus              2       2      684
226. MLF        Friend mink cell focus-inducing virus        5       4     7000
227. MLF        Friend murine leukemia virus                 2       2     4170
228. MLF        Friend spleen focus-forming virus            9       9    13488
229. MLG        Gross passage A murine leukemia virus        2       2     1220
230. MLK        Kirsten murine leukemia virus                1       1     1335
231. MLM        Moloney murine leukemia virus               56      42    35727
232. MLN        Murine non-leukeminogenic retrovirus         1       1      529
233. MLO        AKV murine leukemia virus                    7       2     9000
234. MLR        Rauscher spleen focus-forming virus          2       2     2244
235. MLS        Soule murine leukemia virus                  2       2     1310
236. MLT        Tikaut murine leukemia virus                 1       1      641
237. MLV        Murine leukemia virus                       53      44    48928
238. MLX        Xenotropic murine leukemia virus             1       1     3060
239. MMT        Mouse mammary tumor virus                   29      28    37314
240. MNC        Narcissus mosaic potexvirus                  1       1     6955
241. MOK        Mokola lyssavirus                            2       2      152
242. MOP        Mopeia virus                                 1       1     3419
243. MPM        Mouse polyomavirus                           1       1     1155
244. MPV        Monkeypox virus                              1       1     1276
245. MRV        Marburg virus                                1       1       59
246. MSB        Southern bean mosaic virus                   2       2      793
247. MSC        Sugarcane mosaic virus                       1       1     1782
248. MSH        Harvey murine sarcoma virus                  4       4     3226
249. MSJ        FBJ murine osteosarcoma virus                1       1     4226
250. MSK        Kirsten murine sarcoma virus                 2       2     1933
251. MSN        Solanum nodiflorum mottle virus              1       1      377
252. MSR        FBR murine osteosarcoma virus                1       1     3811
253. MSV        Murine sarcoma virus                         5       5     5020
254. MSY        Myeloproliferative sarcoma virus             3       3     5305
255. MTG        Tomato golden mosaic virus                   3       3     6342
256. MTR        Tobacco rattle virus                         7       7    20386
257. MTS        Lucerne transient streak virus               3       3      970
258. MTV        Tobacco mosaic virus                        22       8    16050
259. MTV        Velvet tobacco mottle virus                  1       1      366
260. MTY        Andean potato latent virus                   1       1       96
261. MTY        Clitoria yellow vein virus                   1       1      120
262. MTY        Eggplant mosaic virus                        3       3     6469
263. MTY        Kennedya yellow mosaic virus                 1       1       83
264. MTY        Ononis yellow mosaic virus                   2       2     6342
265. MTY        Turnip yellow mosaic virus                  20      16    15958
266. MUM        Mumps virus                                 11       9    13622
267. MUR        Murine retrovirus SL3-2                      1       1      492
268. MVE        Murray Valley encephalitis virus             2       2     5994
269. MVM        Minute virus of mice                         9       7    16222
270. MYX        Myxoma virus                                 3       2     4473
271. MZS        Maize streak virus                           5       4     8139
272. NDV        Newcastle disease virus                     49      47    98864
273. NEV        Nephropathia epidemica                       2       2     5466
274. NOD        Nodamura virus                               2       1     1335
275. NPA        Antheraea pernyi nuclear polyhedrosis virus
                                                             1       1      285
276. NPA        Autographa californica nuclear polyhedrosis virus
                                                            45      41    67447
277. NPB        Bombyx mori nuclear polyhedrosis virus       3       3     3931
278. NPG        Galleria mellonella nuclear polyhedrosis virus
                                                             5       5     2556
279. NPM        Mamestra brassicae nuclear polyhedrosis virus
                                                             1       1     2598
280. NPO        Orgyia pseudotsugata polyhedrosis virus      8       8    16937
281. NPS        Spodoptera frugiperda nuclear polyhedrosis virus
                                                             1       1     1557
282. OLV        Ovine lentivirus                             2       2    18512
283. ONN        O'Nyong-nyong virus                          2       1    11835
284. ORF        Orf virus                                    2       1     5003
285. PCB        Baboon endogenous virus                      8       7    20105
286. PCC        Colobus type C cpc-1 endogenous retrovirus
                                                             2       2      373
287. PCE        Chimpanzee type C endogenous retrovirus      2       2      430
288. PCG        Gibbon leukemia virus                        5       4     9202
289. PCM        Macaca endogenous retrovirus                 1       1      126
290. PCM        Macaca mulatta type C retrovirus             4       4      938
291. PCS        Simian sarcoma virus                        12       9    10868
292. PEB        Pea early browning virus                     2       1     7073
293. PEV        Subacute sclerosing panencephalitis virus    3       3     3444
294. PIB        Bovine parainfluenza virus type 3            3       1     8700
295. PIC        Pichinde Arenavirus                          8       8    12637
296. PIF        Human parainfluenza virus type 3            29      27    46139
297. PLV        Potato leaf roll virus                       5       3     6650
298. PLY        Budgerigar fledgling disease virus           1       1     4980
299. PLY        Polyomavirus                               131      39    35440
300. PLY        Polyomavirus BK                              2       2      799
301. PLY        Polyomavirus JC                              3       3      765
302. PMP        Papaya mosaic potexvirus                     2       2     1039
303. PMS        Simian paramyxovirus (SV5)                   1       1     1382
304. PMV        Pepper mottle virus                          1       1     1480
305. POL        Poliovirus                                 120     106    78406
306. POV        Porcine parvovirus                           1       1     3670
307. PPA        Avian papillomavirus                         2       2      786
308. PPB        Bovine papillomavirus                       14      14    32821
309. PPC        Hamster papovavirus                          2       2    10672
310. PPD        Deer papillomavirus                          1       1     8374
311. PPE        European Elk papillomavirus                  4       3     8842
312. PPH        Human papillomavirus                        40      38   101284
313. PPI        Micromys minutus papillomavirus              3       3      487
314. PPL        Lymphotropic papovavirus                     1       1     5270
315. PPM        Monkey B-lymphotropic papovavirus            4       4    10920
316. PPR        Reindeer papillomavirus                      2       2      930
317. PPV        Plum pox potyvirus                           3       3    13827
318. PRH        Prospect Hill virus                          1       1     1675
319. PRV        Porcine rotavirus                           11       9    12190
320. PSV        Peanut stunt virus                           1       1      393
321. PTP        Punta toro phlebovirus                       6       6     7130
322. PTV        Potato spindle tuber viroid                  5       5     1795
323. PV1        Parvovirus H1                                3       2     5302
324. PV3        Parvovirus H3                                1       1      125
325. PVA        Raccoon parvovirus                           2       1     2410
326. PVB        Papovavirus BKV                             38      25    18937
327. PVB        Parvovirus B19                               4       4    11325
328. PVC        Canine parvovirus                            4       4    10016
329. PVD        Bovine parvovirus                            2       1     5517
330. PVF        Feline panleukopenia virus                  10       6    16703
331. PVM        Mink enteritis virus                         4       2     4888
332. PVR        Kilham rat virus                             1       1      125
333. PVR        Parvovirus R1                                2       2      548
334. PVS        Potato virus S                               1       1     3552
335. PVX        Potato virus X                               8       6    22573
336. PVY        Potato virus Y                               8       5    17509
337. RAV        Rabies virus                                21      20    32337
338. RBF        Malignant rabbit fibroma virus               3       3      446
339. RBF        Rabbit fibroma virus                        15      15    28212
340. RBV        Rabbit rotavirus                             1       1     1036
341. RCM        Red clover mottle virus                      1       1     3543
342. RDV        Rice dwarf virus                             5       3     5209
343. REO        Reovirus sp.                                 2       2     2903
344. REO        Reovirus type 1                             21      19    14348
345. REO        Reovirus type 2                             14      12     6823
346. REO        Reovirus type 3                             48      34    25499
347. RML        Rauscher murine leukemia virus               3       3      395
348. RNM        Red clover necrotic mosaic virus             3       2     5338
349. RO1        Rotavirus sp.                                3       3     4074
350. RO1        Rotavirus subgroup 1                         3       2     2712
351. RO2        Rotavirus subgroup 2                         6       6     5955
352. ROB        Bovine rotavirus                            21      16    24214
353. ROH        Human rotavirus                              6       6     8164
354. ROR        Rhesus rotavirus                             2       2     3424
355. ROT        Simian rotavirus SA11                       19      15    20730
356. RPF        Rinderpest virus                             5       5    10323
357. RPV        Raccoonpox virus                             1       1     2195
358. RRV        Ross river virus                             4       3    19686
359. RSB        Bovine syncytial virus                       1       1     1201
360. RSH        Human respiratory syncytial virus           33      21    19332
361. RSV        Rat sarcoma virus                            1       1     1380
362. RUB        Rubella virus                               12       7    26119
363. RVF        Rift Valley fever virus                      1       1     3884
364. SAM        Satellite arabis mosaic virus                1       1      300
365. SAP        Satellite panicum mosaic virus               1       1      826
366. SFS        Sandfly fever Sicilian virus                 2       1     1747
367. SFV        Semliki forest virus                        12       3    15380
368. SHV        Simian hepatitis A virus                     6       4     4331
369. SIG        Sigma virus                                  1       1     1718
370. SIN        Sindbis virus                               16       6    18450
371. SIV        Simian immunodeficiency virus               31      23   106170
372. SIV        Simian immunodeficiency virus                1       1     7759
373. SIV        Simian immunodeficiency virus                3       3     9130
374. SLO        St. Louis encephalitis virus                 8       8     5391
375. SMF        Simian foamy virus                           1       1     3534
376. SND        Parainfluenza virus                         39      31    59944
377. SND        Parainfluenza virus type 4A                  2       2     3767
378. SNV        Spleen necrosis virus                        9       8     3909
379. SPV        Spiroplasma virus                            1       1     4421
380. SRV        Sapporo rat virus                            2       2     5420
381. SSH        Snowshoe hare bunyavirus                    11      10     6726
382. STL        Simian T-cell lymphotropic virus type I      3       3     8227
383. STT        St. Thomas 3 rotavirus                       1       1     1062
384. SUV        Subterranean clover mottle virus             2       2      720
385. SV4        Rhesus macaque polyomavirus                180      42    15361
386. SV5        Simian virus 5                               4       4     5586
387. SVC        Spring viremia of carp virus                 2       2      778
388. SVD        Swine vesicular disease virus                2       2     7475
389. SYE        Sonchus yellow net virus                     3       3     2822
390. TAC        Tacaribe virus                               4       3    10607
391. TAS        Tomato apical stunt viroid                   3       2      723
392. TBE        Tick-borne encephalitis virus                7       5    32678
393. TBR        Tomato black ring virus                     11      11    18222
394. TBS        Tomato bushy stunt virus                     3       2     5172
395. TBV        Tick-borne virus                             1       1     1586
396. TCV        Turnip crinkle virus                         5       5     6433
397. TEV        Tobacco etch virus                           4       3    21315
398. TGE        Transmissible gastroenteritis virus         14       9    20969
399. TME        Theiler's murine encephalomyelitis virus     4       4    26220
400. TMG        Tobacco mild green mosaic virus              3       2     7768
401. TNC        Tobacco necrosis virus                       1       1     3660
402. TNS        Satellite tobacco necrosis virus             4       2     1380
403. TOA        Tomato aspermy virus                         5       5      943
404. TOS        Tomato ringspot virus                        2       2     3096
405. TPM        Tomato plant macho viroid                    1       1      360
406. TRS        Tobacco ringspot virus                       3       3      790
407. TSV        Tobacco streak virus                         3       3     2525
408. TVM        Tobacco vein mottling virus                  4       2     9892
409. UST        Ustilago maydis P6 virus                     1       1     1234
410. UUK        Uukuniemi virus                              2       2     4951
411. VAC        Vaccinia virus                              97      88   389431
412. VAR        Variola virus                                1       1     1274
413. VAZ        Varicella-zoster virus                      11       7   131533
414. VLV        Visna virus                                  2       2     9690
415. VSV        Vesicular stomatitis virus                 169     146   192746
416. VYS        Saccharomyces cerevisiae virus ScV1          1       1      819
417. WCP        White clover mosaic virus                    4       3    13303
418. WDV        Wheat dwarf virus                            2       2     2829
419. WHV        Woodchuck hepatitis virus                    7       7    19239
420. WMS        Woolly monkey sarcoma virus                  2       1     1431
421. WNF        West Nile virus                              7       4    11434
422. WTV        Wound tumor virus                           11       9    14409
423. YFV        Flavivirus febricis                          5       3    22289
424. ZYM        Zucchini yellow mosaic virus                 1       1     1374

     Total                                                4751    3707  6439492

PHAGE

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. AL3        Bacteriophage alpha3                         7       5     1299
  2. BAZ        Bacteriophage Z                              1       1      370
  3. BBF        Bacteriophage BF23                           3       3     1434
  4. BEO        Corynebacteriophage omega                    1       1     1880
  5. BET        Corynebacteriophage beta                     3       2     4162
  6. BEU        Corynebacteriophage gamma                    2       2      139
  7. BFR        Bacteriophage fr                             4       4     2053
  8. BM2        Bacteriophage PM2                            3       3     1025
  9. BNF        Bacteriophage NF                             6       5     3258
 10. BO1        Bacteriophage Bo1                            1       1      205
 11. BP2        Bacteriophage P21                            2       2      191
 12. BPH        Bacteriophage phi-11                         2       2     2041
 13. BT1        Bacteriophage T1                             1       1     1091
 14. BU3        Bacteriophage U3                             1       1      201
 15. BZ3        Bacteriophage Bz13                           1       1      218
 16. C31        Bacteriophage phi-c31                        1       1     3413
 17. CF1        Bacteriophage Cf16                           1       1      500
 18. CP1        Bacteriophage Cp-1                           5       3     3364
 19. CP5        Bacteriophage Cp-5                           4       2     1850
 20. CP7        Bacteriophage Cp-7                           5       3     4792
 21. CP9        Bacteriophage Cp-9                           1       1     1253
 22. CPT        Bacteriophage Cp-T1                          1       1      730
 23. D18        Bacteriophage D108                           9       7     3935
 24. F1C        Bacteriophage f1                            16      13    16373
 25. F2C        Bacteriophage f2                             1       1       58
 26. FR1        Bacteriophage fr1                            1       1      205
 27. G14        Bacteriophage G14                            1       1      113
 28. H19B       Bacteriophage H19B                           2       2     3301
 29. H30        Bacteriophage H30                            1       1     1905
 30. H44        Bacteriophage H4489A                         1       1     3222
 31. HB3        Bacteriophage HB-3                           1       1     1319
 32. HP1        Bacteriophage HP1                            4       2    10673
 33. IKE        Bacteriophage Ike                            3       2     7200
 34. J93        Bacteriophage 933J                           2       1     1499
 35. JP3        Bacteriophage Jp34                           2       2     1070
 36. JP5        Bacteriophage Jp501                          1       1      205
 37. K5T        Bacteriophage BK5-T                          5       5     2070
 38. KU1        Bacteriophage Ku1                            1       1      220
 39. L17        Bacteriophage L17                            2       2      240
 40. L54        Bacteriophage L54a                           1       1     1626
 41. LAM        Bacteriophage lambda                       120      24    55603
 42. LP7        Bacteriophage LP7                            1       1     2110
 43. M13        Bacteriophage M13                           12       8     8218
 44. M13MP7     Bacteriophage M13mp7                         1       1       60
 45. M13MP8     Bacteriophage M13mp8                         3       3      240
 46. M13MP9     Bacteriophage M13mp9                         2       2      318
 47. M2Y        Bacteriophage M2Y                            2       2      336
 48. MS2        Bacteriophage MS2                           16       8     4679
 49. OX2        Bacteriophage Ox2                            2       2     2641
 50. P15        Bacteriophage phi-105                        1       1     1306
 51. P16        Bacteriophage 16-3                           1       1      720
 52. P18        Bacteriophage 186                            1       1     3561
 53. P21        Bacteriophage phi-21                         2       2      949
 54. P22        Bacteriophage P22                           17      15    18461
 55. P29        Bacteriophage phi-29                        18      15    29805
 56. P42        Bacteriophage 42D                            2       2     1986
 57. P434       Bacteriophage 434                            7       5     2933
 58. P80        Bacteriophage phi-80                         7       6     4714
 59. P82        Bacteriophage 82                             1       1     1200
 60. P93        Bacteriophage 933W                           2       1     1661
 61. PA2        Bacteriophage PA-2                           1       1     2816
 62. PF1D       Bacteriophage Pf1                            1       1      435
 63. PF3        Bacteriophage Pf3                            4       4    12981
 64. PFD        Bacteriophage fd                            12       7     7334
 65. PFI        Bacteriophage Fi                             1       1       78
 66. PG4        Bacteriophage G4                            12       8     7247
 67. PGA        Bacteriophage Ga                             4       4     4022
 68. PH1        Bacteriophage H1                             1       1       98
 69. PH15       Bacteriophage phi-15                         3       3     2352
 70. PH2        Bacteriophage 21                             1       1     1688
 71. PH3        Bacteriophage phi-3T                         2       2     3422
 72. PH5        Bacteriophage phi-105                        6       5     3851
 73. PH6        Bacteriophage phi-6                          7       7    13619
 74. PHC        Lactococcus 1 bacteriophage                  1       1     1654
 75. PHI        Bacteriophage phi-H                          1       1     2465
 76. PHK        Bacteriophage phi-K                          3       2      426
 77. PHM        Bacteriophage phi-vML3                       1       1     1208
 78. PK3        Bacteriophage K3                             7       6     6630
 79. PM1        Bacteriophage M1                             1       1     1714
 80. PM2        Bacteriophage M2                             1       1     1820
 81. PMU        Bacteriophage Mu                            48      37    18049
 82. PP1        Bacteriophage P1                            43      41    20939
 83. PP2        Bacteriophage P2                            11      10     7614
 84. PP4        Bacteriophage P4                             9       8    14159
 85. PP7        Bacteriophage P7                             6       5     3315
 86. PQB        Bacteriophage Q-beta                        14      13     1866
 87. PR4        Bacteriophage PR4                            2       2      240
 88. PR5        Bacteriophage PR5                            2       2      238
 89. PR722      Bacteriophage PR722                          2       2      240
 90. PRD1       Bacteriophage PRD1                           9       9     9061
 91. PS2        Bacteriophage PBS2                           1       1      720
 92. PSP        Bacteriophage Sp                             3       2     4542
 93. PST        Bacteriophage ST                             1       1      246
 94. PT2        Bacteriophage T2                             9       6     8743
 95. PT3        Bacteriophage T3                            21      18    16851
 96. PT4        Bacteriophage T4                           120      67   128557
 97. PT5        Bacteriophage T5                            29      26    26837
 98. PT6        Bacteriophage T6                             4       3     2938
 99. PT7        Bacteriophage T7                            41      18    47176
100. PVK        Bacteriophage VK                             1       1      246
101. PX1        Bacteriophage phi-X174                      40      15     7239
102. PZA        Bacteriophage PZA                            3       1    19366
103. R17        Bacteriophage R17                            9       7      463
104. RB1        Bacteriophage RB18                           1       1      674
105. RB5        Bacteriophage RB51                           1       1      700
106. RHO        Bacteriophage Rho11s                         2       1     2187
107. S13        Bacteriophage S13                            2       1     5386
108. SF6        Bacteriophage SF6                            1       1      996
109. SP1        Bacteriophage SPO1                          20      20     6864
110. SP2        Bacteriophage SPO2                           1       1     3040
111. SP6        Bacteriophage SP6                            5       4     2948
112. SP8        Bacteriophage SP82                           5       5     1527
113. SPB        Bacteriophage SP-beta                        4       3     2224
114. SPC        Bacteriophage S-phi-C                        1       1     1377
115. SPP        Bacteriophage SPP1                           2       2     1558
116. SPR        Bacteriophage SPR                            3       1     2129
117. ST1        Bacteriophage ST-1                           2       2      844
118. T12        Bacteriophage T12                            1       1     1837
119. TH1        Bacteriophage TH1                            1       1      220
120. TW1        Bacteriophage TW19                           1       1       76
121. TW2        Bacteriophage TW28                           1       1      260

     Total                                                 880     593   682556

SYNTHETIC

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1. ACC        Cloning vector                               1       1     1337
  2. AD2        Artificial gene                              1       1      128
  3. ADB        Artificial gene                              8       8      573
  4. ADH        Artificial gene                              1       1      106
  5. ADL        Artificial gene                              3       3      273
  6. ADV        Artificial gene                              1       1      106
  7. ALM        Avian myeloblastosis virus                   1       1      337
  8. ALR        Rous sarcoma virus                           4       4      413
  9. AMH        Artificial gene                              1       1      234
 10. APH        Artificial gene                              1       1      400
 11. ARB        Artificial gene                              3       3     1180
 12. ARC        Cloning vector                               2       2      760
 13. ARE        Artificial gene                              1       1      255
 14. ARG        Artificial gene                              1       1      249
 15. ARH        Artificial gene                              5       5      440
 16. ARI        Artificial gene                              1       1      465
 17. ARL        Artificial gene                              2       2      424
 18. ARM        Artificial gene                              1       1      457
 19. ARN        Cloning vector                               1       1      333
 20. ARP        Cloning vector                               6       6     1079
 21. ARS        Artificial gene                              1       1      529
 22. ART        Artificial gene                              1       1       60
 23. ARY        Artificial gene                              1       1      264
 24. ATH        Artificial gene                              1       1      417
 25. BAM        Artificial gene                              1       1       85
 26. BKV        BK Virus                                     6       3     1560
 27. BOV        Bos taurus                                  18      18     6440
 28. BSF        Cloning vector                               2       2       54
 29. BSM        Cloning vector                               1       1       54
 30. BSU        Bacillus subtilis                           10       9     3921
 31. BTH        Artificial gene                              2       2      104
 32. CAR        Artificial gene                              1       1     3616
 33. CEL        Caenorhabditis elegans                       1       1      186
 34. CHK        Gallus sp.                                   4       4      701
 35. CHS        Artificial gene                              1       1      478
 36. CMVMUS     Artificial gene                              1       1     1376
 37. COT        Artificial gene                              1       1     7876
 38. CRO        Artificial gene                              2       2      198
 39. CVC        Cloning vector                               1       1       46
 40. CVE        Cloning vector                               1       1       60
 41. CVJ        Cloning vector                               5       5      390
 42. CVK        Cloning vector                               1       1      120
 43. CYN        Artificial gene                              1       1      282
 44. DRO        Drosophila sp.                               4       4     4200
 45. E6V        Artificial gene                              2       2      206
 46. ECO        Escherichia coli                           124     111    24710
 47. EGF        Artificial gene                              1       1      299
 48. ERY        Artificial gene                              1       1      217
 49. EXP        Cloning vector                               2       2      123
 50. EZZ        Cloning vector                               1       1       60
 51. FCN        Artificial gene                              1       1       42
 52. FCS        Cloning vector                               2       2      136
 53. FLA        Artificial gene                              1       1       69
 54. FLU        Influenza virus                              6       6      861
 55. FSB        Artificial gene                              2       2      747
 56. GFA        Artificial gene                              1       1      176
 57. HAL        Artificial gene                              4       3     1633
 58. HBV        Hepatitis B virus                            3       3      315
 59. HCY        Artificial gene                              1       1      313
 60. HET        Hetropolymeric DNA                           2       2      594
 61. HIR        Artificial gene                              1       1      220
 62. HIV        Artificial gene                              6       6      879
 63. HL1        Artificial gene                              4       4      238
 64. HNR        Artificial gene                              1       1       90
 65. HPB        Artificial gene                              1       1      556
 66. HS1        Artificial gene                              1       1      780
 67. HS2        Artificial gene                              2       2      129
 68. HS5        Human cytomegalovirus                        1       1      210
 69. HSV        Herpes Simplex Virus                         6       6      323
 70. HUM        Artificial human gene                       80      71    22856
 71. HY3        Plasmid pHY300PLK                            1       1     4870
 72. IFH        Cloning vector                               1       1       63
 73. IL1        Artificial gene                              1       1       88
 74. INS        Artificial gene                              1       1      232
 75. ISN        Insertion element                            6       6      378
 76. JRD        Cloning vector                               3       3     6852
 77. KAN        Cloning vector                               3       3      210
 78. KPN        Klebsiella pneumoniae                        2       2      354
 79. KY1        Artificial gene                              1       1      171
 80. LAC        Cloning vector                               2       2     1173
 81. LAM        Bacteriophgage lambda                        4       4      336
 82. LET        Artificial gene                              1       1      212
 83. LGT        Cloning vector lambda gt11                   1       1      210
 84. LHM        Artificial gene                              1       1      232
 85. LOR        Cloning vector                               1       1     5614
 86. M13        Cloning vector M13                           8       8      643
 87. M13MP7     Cloning vector M13mp7                        2       2      120
 88. M13MP8     Cloning vector M13mp8                        1       1      382
 89. M13MP9     Cloning vector M13mp9                        1       1       60
 90. M13TG103   Cloning vector M13tg103                      1       1       66
 91. M13TG114   Cloning vector M13tg114                      1       1       60
 92. M13TG115   Cloning vector M13tg115                      1       1       66
 93. M13TG117   Cloning vector M13tg117                      1       1       63
 94. M13TG120   Cloning vector M13tg120                      1       1       54
 95. M13TG130   Cloning vector M13tg130                      1       1       93
 96. M13TG131   Cloning vector M13tg131                      1       1       93
 97. MBO        Artificial gene                              1       1       91
 98. MBR        Artificial gene                              3       3      157
 99. MCA        Cauliflower mosaic virus                     2       2      139
100. MCV        Cucumber mosaic virus                        5       5      284
101. MHI        Mouse-human hybrid                           4       4     1574
102. MLE        Artificial gene                              1       1      936
103. MLF        Artificial gene                              1       1      213
104. MLM        Artificial gene                              2       2      178
105. MML        Cloning vector                              12       4    24042
106. MNV        Artificial gene                              1       1       87
107. MP7        Artificial gene                              2       1       69
108. MP8        Artificial gene                              2       1       60
109. MP9        Artificial gene                              2       1       60
110. MS2        Artificial gene                              1       1      100
111. MSM        Artificial gene                              2       2      331
112. MUS        Mus musculus                                38      38     4298
113. NEU        Artificial gene                              2       2      171
114. NNL        Plasmid pNNL                                 1       1      815
115. NPA        Autographa californica nuclear polyhedrosis virus
                                                             3       3      922
116. OVC        Artificial gene                              1       1      738
117. P17X       Plasmid pACYC177                             7       6     4190
118. P18X       Plasmid pACYC184                             5       4     4593
119. P23        Artificial gene                              1       1      119
120. PAC        Cloning vector                               1       1       83
121. PAH        Artificial gene                              2       2      107
122. PBD        Cloning vector                               1       1       79
123. PBG        Cloning vector                               6       3    12379
124. PBR        Plasmid pBR322                              43      23     7123
125. PBR313     Plasmid pBR313                               1       1      200
126. PBR322SV   Plasmid pBR322/SV40 hybrid                   5       5      209
127. PBR325     Plasmid pBR325                               3       3      319
128. PBR327     Plasmid pBR327                               3       3     3334
129. PBR329     Plasmid pBR329                               1       1     4150
130. PBR345     Plasmid pBR345                               2       2     1024
131. PBRH4      Plasmid pBRH4                                1       1       71
132. PCE        Cloning vector                               1       1      510
133. PCG86      Plasmid pCG86                                2       2      654
134. PCZ        Plasmid pCZ                                  2       2      208
135. PDPL       Plasmid PDPL13                               1       1       79
136. PEA        Artificial gene                              1       1     1004
137. PEM        Cloning vector pEMBL8m                       4       2     7878
138. PES        Cloning vector                               1       1       99
139. PF1        Bacteriophage f1                             1       1      254
140. PFD        Artificial gene                              1       1       85
141. PFE        Plasmid pFE                                  2       2      180
142. PFH        Plasmid pFH                                  1       1      120
143. PFL        Cloning vector                               2       1     4588
144. PFR        Plasmid pFR                                  4       4      341
145. PFX        Artificial gene                              2       1     3627
146. PHP        Plasmid pHP45                                1       1      155
147. PHS        Plamsid pHS                                  3       3     2877
148. PHV100     Cloning vector                               1       1      396
149. PHV33      Artificial gene                             13      13      650
150. PIC        Plasmid pIC                                  5       5      477
151. PIG        Artificial pig gene                          3       3      440
152. PIP1088    Plasmid pIP1088                              2       2      142
153. PIVX       Cloning vector pi-VX                         1       1      902
154. PJSC73     Plasmid pJSC73                               1       1     3564
155. PK18       Cloning vector                               1       1     2661
156. PKN        Plasmodium knowlesi                          2       1      360
157. PKT        Artificial gene                              3       3      264
158. PKU        Cloning vector                               3       2     7825
159. PL2        Artificial gene                              2       2      240
160. PL5        Artificial gene                              2       2      310
161. PLB        Cloning vector                               1       1      852
162. PLF        Cloning vector                               2       1     3641
163. PLY        Artificial gene                              1       1       66
164. PMB9       Cloning vector                               1       1      138
165. PMC1843    Plasmid pMC1843                              1       1       62
166. PMK20      Artificial gene                              2       1     4028
167. PMT        Cloning vector                               1       1     2854
168. PMU        Artificial gene                              4       4      576
169. POG        Cloning vector                               1       1      352
170. POL        Artificial gene                              2       2      129
171. POLY       Cloning vector                               6       3     6226
172. PORI17     Plasmid pOri17                               2       2      490
173. PPI        Cloning vector                               1       1     4734
174. PPUC       Cloning vector                               1       1       75
175. PQB        Artificial gene                              1       1       64
176. PRK        Cloning vector                               2       2      839
177. PRT        Artificial gene                              1       1      711
178. PRW1707    Plasmid pRW1707                              1       1       66
179. PRW1718    Plasmid pRW1718                              1       1       72
180. PRW1724    Plasmid pRW1724                              1       1       66
181. PRW1725    Plasmid pRW1725                              1       1       66
182. PSE        Artificial gene                              2       2      139
183. PSI        Cloning vector                               1       1       81
184. PSKS104    Plasmid pSKS104                              1       1       69
185. PSKS105    Plasmid pSKS105                              1       1       60
186. PSKS106    Plasmid pSKS106                              1       1       60
187. PSKS107    Plasmid pSKS107                              1       1       46
188. PSMF       Cloning vector                               2       2      259
189. PSP        Cloning vector                               3       3      215
190. PSR        Artificial gene                              1       1      138
191. PSS        Cloning vector                               2       2      475
192. PT4        Bacteriophage T4                             4       4      725
193. PT7        Bacteriophage T7                             2       2      282
194. PTK        Plasmid pTK                                  1       1       68
195. PTL        Cloning vector                               1       1       51
196. PTN        Plasmid pTN                                  1       1      355
197. PTR        Plasmid pTr                                  1       1      137
198. PTU        Artificial gene                              4       4      883
199. PTZ        Plasmid pTZ12                                1       1     2517
200. PUC        Cloning vector                               2       1     3914
201. PUEX       Cloning vector                               2       1     6728
202. PVH51      Plasmid pVH51                                1       1     3847
203. PX1        Bacteriophage phi-X174                       1       1       59
204. PYM        Artificial gene                              1       1      252
205. PYR        Artificial gene                              1       1      158
206. PZ189      Cloning vector                               1       1      153
207. R38        Plasmid R388                                 1       1     1167
208. R67        Plasmid R67                                  1       1      353
209. R6K        Cloning vector                               2       2      176
210. RAD        Artificial gene                              1       1      955
211. RAT        Rattus sp.                                  14      13     1864
212. RET        Cloning vector                               2       2      780
213. RMT        Artificial gene                              6       6      638
214. RNA        Artificial gene                              1       1      328
215. ROT        Artificial gene                              2       2      141
216. RRNA       Artificial gene                              1       1      136
217. RSC1       Plasmid Rsc13                                3       1     7894
218. RSF1050    Plasmid RSF1050                              1       1      104
219. RSP        Artificial gene                              1       1      100
220. RSV        Rous Sarcoma Virus                           3       3      450
221. RTS        Artificial gene                              1       1      280
222. S100       Artificial gene                              1       1      283
223. SAA        Bacteriophage sigma-11-AA248                 1       1       83
224. SAU        Staphylcoccus aureus                         1       1       60
225. SFV        Semliki forest virus                         3       3      171
226. SHI        Cloning vector                               3       3      428
227. SHU        Artificial gene                              3       3      272
228. SIN        Cloning vector                               2       2      596
229. SLM        Artificial gene                             10      10      817
230. SOMINS     Artificial gene                              1       1      226
231. SOP        Artificial gene                              1       1      111
232. SP02       Bacteriophage SP02                           1       1      487
233. SP6        Artificial gene                              1       1       78
234. SPI        Artificial gene                              2       2      295
235. SRU        Artificial gene                              1       1      252
236. STA        Artificial gene                              4       4      619
237. STM        Artificial gene                              1       1       71
238. STY        Salmonella sp.                               1       1      135
239. SV4        Simian Virus 40                             13      13     2415
240. SVA        Artificial gene                              1       1      213
241. SYN        Plasmid pDSP1                              161     146    49857
242. SYN        Synthetic sequence                          51      48   131042
243. T13        Artificial gene                              1       1      223
244. T4L        Artificial gene                              1       1      518
245. TAC        Artificial gene                              1       1      842
246. THA        Artificial gene                              1       1      641
247. THY        Plasmid pUC8                                 2       1      503
248. TI         Plasmid Ti                                   4       3     6552
249. TN3        Artificial gene                              1       1      110
250. TNP        Artificial gene                              1       1      192
251. TNS        Cloning vector                               2       2      144
252. TOB        Artificial gene                              1       1      788
253. TRN28      Cloning vector                               2       2      284
254. TRN3       Transposon Tn3                              10      10     1119
255. TRN5       Artificial gene                              1       1       80
256. TRNB       Artificial gene                              1       1       84
257. TU4        Cloning vector                               2       2      350
258. VAC        Cloning vector                               4       4      683
259. VCH        Artificial gene                              1       1      444
260. VEC        Cloning vector                               1       1      143
261. VTR        Cloning vector                               1       1      148
262. WHL        Artificial gene                              1       1      507
263. XEL        Xenopus laevis                              13      13     1227
264. YSC        Saccharomyces cerevisiae                    41      40    10154
265. YSE        Artificial gene                              2       1     1795
266. YST        Artificial gene                              1       1       82
267. ZMO        Artificial gene                              3       3      740

     Total                                                1129    1028   516186

UNANNOTATED

     Key        Name                                   Reports Entries    Bases
-------------------------------------------------------------------------------
  1.            Unidentified                              4909    3756  4792964

     Total                                                4909    3756  4792964
